Skill collection

BioTender-max/awesome-bio-agent-skills

1,012 agent skills across 15 categories, read straight from the repository tree. The repo holds 1,705 SKILL.md files — 70 are the same skills republished elsewhere in the tree, and we count things rather than copies.

BioTender-maxgithub.com/BioTender-maxProfile →
1,012
Skills published
15
Categories
471
Ship scripts
135
Stars on the repo
Tracked on the radar · 135★Repository facts and velocity →
Data & Analytics · 254
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jgi-lakehouseQueries JGI Lakehouse (Dremio) for genomics metadata from GOLD, IMG, Mycocosm, Phytozome. Downloads genome…scriptsgwas-prsCalculate polygenic risk scores from DTC genetic data using the PGS Catalogscriptstooluniverse-rnaseq-deseq2Production-ready RNA-seq differential expression analysis using PyDESeq2. Performs DESeq2 normalization…scriptsneuropixels-analysisNeuropixels neural recording analysis. Load SpikeGLX/OpenEphys data, preprocess, motion correction, Kilosort4…scriptsnutrigx-advisorPersonalised nutrition report from consumer genetic data (23andMe, AncestryDNA, VCF) — interrogates…scriptsprotein-interaction-network-analysisAnalyze protein-protein interaction networks using STRING, BioGRID, and SASBDB databases. Maps protein…scriptseqtl-catalogue-region-fetchFetch a region of cis-eQTL summary statistics from EBI eQTL Catalogue v7+ via tabix-on-FTP. Use when an agent…scriptstooluniverse-statistical-modelingPerform statistical modeling and regression analysis on biomedical datasets. Supports linear regression…scriptsbio-alignment-msa-parsingParse and analyze multiple sequence alignments using Biopython. Extract sequences, identify conserved…scripts
scientific-impact-assessmentopen-notebooktooluniverse-polygenic-risk-scoreproteomics-clocktooluniverse-gwas-trait-to-genebeautiful-data-vizpharmgx-reporterproteomics-dewebmd-drug-reviewsbio-chipseq-differential-bindingtooluniverse-precision-medicine-stratificationtooluniverse-gwas-drug-discoveryscanpydruglib-reviewsopenfda-human-drugpharmgkb-clinpgxphee-querywes-clinical-report-eswes-clinical-report-enbio-ensembl-restbio-data-visualization-network-visualizationclinpgxfastreerbio-ncbi-datasets-cli+ 221 more
Databases · 89
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turingdb-graphBuild, query, and analyse biomedical knowledge graphs in TuringDB, a columnar graph database with git-like…scriptsscientific-writingCore skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never…writesscriptsmecddi-queryQuery the MecDDI mechanism-based drug-drug interaction database. Use whenever the user asks about drug-drug…scriptsstitch-queryQuery the STITCH chemical-protein interaction database. Use whenever the user asks about chemical-protein…scriptsTTDQuery the Therapeutic Target Database (TTD) for drug-target-disease interaction data. Use this skill when the…scriptsunitox-queryQuery the UniTox drug toxicity database. Use whenever the user asks about organ-system toxicity ratings for a…scriptsuniprot-databaseDirect REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For…scriptsADReCS-queryQuery the ADReCS (Adverse Drug Reaction Classification System) v3.3 database. Use whenever the user asks…scriptsbindingdb-queryQuery the BindingDB drug-target binding affinity database. Use whenever the user asks about protein-ligand…scripts
chebi-querychembl-queryDDInter16_DGIdbdrugbank-querydrugcentral-queryDrugCombdrugmechdb-queryDrugRepoBank-queryGDKD-querybio-local-blastrepodb-queryRepurposeDrugs-querybio-blast-searchesNCI-DTP-MolTargetbio-entrez-linkbio-rna-structure-ncrna-searchbio-geo-databio-biomart-queriesbio-interaction-databasesbio-uniprot-accessbio-small-rna-seq-target-predictionbio-variant-annotationbio-variant-normalization+ 56 more
Workflow & Productivity · 56
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galaxy-bridgeGalaxy tool discovery, intelligent recommendation, and execution — 8,000+ bioinformatics tools from…scriptsnfcore-scrnaseq-wrapperWrapper skill for running nf-core/scrnaseq upstream single-cell RNA-seq preprocessing from FASTQ with strict…scriptsnfcore-rnaseq-wrapperWrapper skill for running nf-core/rnaseq bulk RNA-seq preprocessing from FASTQ or BAM inputs with strict…scriptsbioconductor-bridgeBioconductor package discovery, workflow recommendation, setup inspection, and starter code generation…scriptsbio-workflows-atacseq-pipelineEnd-to-end ATAC-seq workflow from FASTQ files to differential accessibility and TF footprinting. Covers…scriptsbio-workflows-fastq-to-variantsEnd-to-end DNA sequencing workflow from FASTQ files to variant calls. Covers QC, alignment with BWA, BAM…scriptsbio-clinical-databases-polygenic-riskConstructs and validates polygenic risk scores using LDpred2-auto, SBayesRC, MegaPRS, PRS-CS, PROSPER…scriptsbio-workflows-rnaseq-to-deEnd-to-end RNA-seq workflow from FASTQ files to differential expression results. Covers QC, quantification…scriptsbio-virtual-screeningPerforms structure-based virtual screening using AutoDock Vina, SMINA, GNINA (CNN scoring), and DiffDock-L…scripts
bio-workflows-genome-assembly-pipelinebio-workflows-gwas-pipelinebio-workflows-metagenomics-pipelinebio-molecular-descriptorsbio-pharmacophore-modelingbio-crispr-screens-bagel-essentialitybioskillsbio-rna-quantification-tximport-workflowbio-workflow-management-snakemake-workflowssequence-and-format-iobio-workflows-expression-to-pathwaysbio-workflow-management-cwl-workflowsworkflow-managementsystems-biologyspatial-transcriptomicsribo-seqreporting-and-figure-exportread-qcpathogen-epi-genomicsmultiome-scatacmulti-omics-integrationmicrobiome-ampliconmethylation-analysismetabolomics+ 23 more
AI & Agents · 53
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venue-templatesAccess comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific…writesscriptstooluniverse-metabolomicsComprehensive metabolomics research skill for identifying metabolites, analyzing studies, and searching…scriptsgwas-catalog-region-fetchFetch a region of GWAS summary statistics from the NHGRI-EBI GWAS Catalog harmonised collection via…scriptsscientific-visualizationMeta-skill for publication-ready figures. Use when creating journal submission figures requiring multi-panel…scriptspyhealthBuild clinical/healthcare deep-learning pipelines with PyHealth — loading EHR/signal/imaging datasets…scriptspacsomaticOperator toolkit for nf-core/pacsomatic matched tumor-normal workflows from BAM inputs. Use this skill when…scriptsWHO-EML-queryQuery the WHO Model List of Essential Medicines (23rd list, 2023). Use whenever the user asks about essential…scriptsprofile-reportUnified personal genomic profile report — reads a PatientProfile JSON and synthesizes all skill results into…scriptsfda-orange-book-queryQuery or inspect the FDA Orange Book - FDA-Approved Drug Products Listing resource for drug-centric tasks…scripts
bio-motif-searchbio-toolsbio-causal-genomics-genomic-sembio-causal-genomics-heritability-partitioningbio-genome-annotation-ncrna-annotationbio-orchestratorbio-atac-seq-deep-learning-atacbio-admet-predictionbio-read-alignment-hisat2-alignmentbio-ml-docking-rescoringbio-comparative-genomics-positive-selectionbio-phylo-bayesian-inferencescvi-toolsclaw-shellbio-outlier-splicing-detectiontooluniverse-structural-variant-analysissimpy-discrete-event-simulationesmfold2diffdockconda-env-managerconn-tooldependency-plannerdipy-toolexperiment-controller+ 20 more
Testing & QA · 50
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skill-creatorCreate new skills, modify and improve existing skills, and measure skill performance. Use when users want to…scriptstooluniverse-single-cellProduction-ready single-cell and expression matrix analysis using scanpy, anndata, and scipy. Performs…scriptstooluniverse-image-analysisProduction-ready microscopy image analysis and quantitative imaging data skill for colony morphometry, cell…scriptsdnaspFull reimplementation of DnaSP 6 for population genetics analysis of aligned DNA sequences. Covers nucleotide…scriptstooluniverse-epigenomicsProduction-ready genomics and epigenomics data processing for BixBench questions. Handles methylation array…scriptsbio-bedgraph-handlingCreate, manipulate, and convert bedGraph files for genome browser visualization. Covers bedGraph format…scriptsbio-genome-intervals-bigwig-tracksCreate and read bigWig browser tracks for visualizing continuous genomic data. Convert bedGraph to bigWig…scriptsbio-genome-intervals-coverage-analysisCalculate read depth and coverage across genomic intervals using bedtools genomecov and coverage. Generate…scriptsbio-methylation-differential-cpgPer-CpG differential methylation testing from bisulfite sequencing count data or beta-value matrices. Covers…scripts
bio-differential-splicingbio-comparative-genomics-gene-family-evolutionbio-comparative-genomics-introgression-detectionbio-clinical-biostatistics-logistic-regressionbio-crispr-screens-mageck-analysisbio-copy-number-cnvkit-analysisbio-clip-seq-clip-peak-callingbio-sashimi-plotsbio-scaffold-analysisbio-population-genetics-selection-statisticsbio-single-cell-splicingbio-bam-statisticsbio-splicing-quantificationfigure-stylebio-reads-qc-mappinggtarsbio-causal-genomics-colocalization-analysispolars-biobio-de-edger-basicsbio-ecological-genomics-biodiversity-metricstooluniverse-target-researchlatex-research-postersbio-data-visualization-statistical-annotationbio-methylation-methylkit+ 17 more
Design & Presentation · 45
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scientific-slidesBuild slide decks and presentations for research talks. Use this for making PowerPoint slides, conference…writesscriptsbio-reverse-complementGenerate reverse complements and complements of DNA/RNA sequences using Biopython. Use when working with…scriptsbio-crispr-screens-drugz-chemogenomicAnalyzes CRISPR drug-modifier (chemogenomic) screens with drugZ (Li & Hart 2019 Genome Med), a bidirectional…scriptsbio-workflows-crispr-editing-pipelineEnd-to-end CRISPR experiment design from target selection to delivery-ready constructs. Covers guide RNA…scriptsbio-covalent-designDesigns covalent inhibitors and warheads targeting cysteine (most common, 98% of covalent drugs), lysine…scriptsbio-crispr-screens-hit-callingCross-method decision tree for calling hits in pooled CRISPR screens. Catalogs statistical models (MAGeCK…scriptsbio-crispr-screens-in-vivo-screensDesigns and analyzes in vivo CRISPR screens in animal tumor models, organoids, and immune-cell adoptive…scriptsbio-crispr-screens-library-designDesigns pooled sgRNA libraries for CRISPR knockout, interference (CRISPRi), activation (CRISPRa), Cas12a…scriptsbio-workflows-neoantigen-pipelineEnd-to-end neoantigen discovery from somatic variants to ranked vaccine candidates. Integrates HLA typing…scripts
bio-crispr-screens-perturb-seq-analysisbio-crispr-screens-prime-editing-screensbio-primer-design-primer-validationbio-protac-degradersbio-primer-design-qpcr-primersbio-retrosynthesisbio-crispr-screens-batch-correctionbio-crispr-screens-base-editing-analysisdrug-photobio-prefect-dask-nextflowtooluniverse-literature-deep-researchend-to-end-protein-design-workflowtooluniverse-protein-therapeutic-designbio-experimental-design-power-analysisbio-generative-designbio-experimental-design-batch-designproteina-complexabinder-design-tool-selectionalphafold2-multimerdifferential-expressionsgrna-design-guideboltz-structure-predictionesm2-sequence-scoringcobrapy-metabolic-modeling+ 12 more
Code Review & Quality · 41
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tooluniverse-variant-analysisProduction-ready VCF processing, variant annotation, mutation analysis, and structural variant (SV/CNV)…scriptsbio-alignment-msa-statisticsCalculate alignment statistics including sequence identity, conservation scores, substitution matrices, and…scriptsliterature-reviewConduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv…writesscriptsscientific-schematicsCreate publication-quality scientific diagrams using Nano Banana 2 AI with smart iterative refinement. Uses…writesscriptssec-reportSEC (size-exclusion chromatography) analysis with peak detection, oligomer classification, and…scriptsexa-searchWeb toolkit powered by Exa, tuned for scientific and technical content. Use this skill when the user needs to…scriptsbio-phylo-modern-tree-inferenceBuild maximum likelihood phylogenetic trees using IQ-TREE2 and RAxML-NG with expert model selection, branch…scriptsbio-chipseq-qcAssesses ChIP-seq quality across antibody specificity, fragmentation, enrichment, replicate concordance, and…scriptsbio-rna-quantification-count-matrix-qcQuality control and exploration of RNA-seq count matrices before differential expression. Check for outliers…scripts
bio-genome-assembly-assembly-qcbio-vcf-statisticsbio-alignment-filteringbio-genome-assembly-contamination-detectionbio-systems-biology-model-curationbio-clip-seq-clip-qcbio-population-genetics-plink-basicsbio-primer-design-primer-basicsbio-reporting-automated-qc-reportsreport-templatepaper-narrativebio-logicprotein-design-qctooluniverse-crispr-screen-analysismanuscript-review-councilbio-pathway-enrichment-visualizationSingle-Cell Analysis Skills Indexbio-atac-seq-atac-qcgenome-assemblychip-seqnapari-image-viewerproposal-reviewvcf-variant-filteringsds-gel-review+ 8 more
Backend & API · 38
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tooluniverse-clinical-trial-designStrategic clinical trial design feasibility assessment using ToolUniverse. Evaluates patient population…scriptsrxnorm-queryQuery the RxNorm drug naming and normalization API. Use whenever the user asks to look up an RxCUI, normalize…scriptspolars-dovmedSearch the PMC Open Access literature with polars-dovmed. Author structured JSON queries directly, then use…scriptsarxiv-searchSearch arXiv preprints through the official arXiv API and turn arXiv IDs into local Markdown summaries. Use…scriptsfaers-queryQuery the FDA Adverse Event Reporting System (FAERS) via openFDA API. Use whenever the user asks about…scriptsiuphar-pharmacologyQuery the IUPHAR/BPS Guide to Pharmacology REST API for drug targets, ligands (drugs/compounds), and their…scripts52_NDF_RTQuery NDF-RT (National Drug File Reference Terminology) via the NCI EVS REST API. Use when looking up drug…scriptsmolecular-targets-queryQuery the NCI CCDI Molecular Targets Platform (pediatric oncology) for targets (genes), diseases, drugs, and…scriptsbio-entrez-searchSearch NCBI databases using Biopython Bio.Entrez (ESearch, EInfo, EGQuery, ESpell). Use when finding records…scripts
bio-batch-downloadsbio-ortholog-inferencebiorxiv-searchusing-model-endpointwikipedia-searchbio-clinical-databases-clinvar-lookupbio-crispr-screens-screen-qcmodalrdkit-cheminformaticscrossref-lookupchai1-structure-predictionautodock-vina-dockingadaptyvget-api-docsmulti-search-enginemanaged-model-endpointsopentrons-protocol-apispikeinterface-electrophysiologykegg-pathway-analysisscvi-tools-single-cellalphafold2adaptyv-bioucsc-genome-browserbiopython-molecular-biology+ 5 more
Content & Marketing · 24
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tooluniverse-phylogeneticsProduction-ready phylogenetics and sequence analysis skill for alignment processing, tree analysis, and…scriptshugging-scienceUse when the user is doing AI/ML work in a scientific domain — biology, chemistry, physics, astronomy…scriptsbio-sequence-propertiesCalculate sequence properties like GC content, molecular weight, isoelectric point, and GC skew using…scriptspsytar-queryQuery the PsyTAR psychiatric adverse-reaction corpus. Use when the user asks about patient-reported ADRs…scriptsbio-comparative-genomics-ancestral-reconstructionReconstruct ancestral states at internal phylogenetic nodes for sequences (PAML codeml, IQ-TREE --ancestral…scriptsbio-workflows-crispr-screen-pipelineEnd-to-end pooled and single-cell CRISPR screen analysis from FASTQ to hit genes. Orchestrates library design…scriptsbio-copy-number-focal-amplification-ecdnaResolve the architecture of focal oncogene amplifications — extrachromosomal DNA (ecDNA)…scriptsbio-copy-number-gatk-cnvCall copy number variants with the GATK best-practices workflows — the somatic CNV pipeline…scriptsbio-comparative-genomics-gene-tree-species-tree-reconciliationReconcile gene trees against a species tree under probabilistic models of duplication, transfer, and loss…scripts
bio-copy-number-germline-cnv-interpretationbio-comparative-genomics-ortholog-inferencebio-copy-number-cnv-visualizationbio-copy-number-cnv-annotationbio-chipseq-motif-analysisbio-comparative-genomics-pangenome-analysisbio-copy-number-recurrent-cnvpdf-explorebio-copy-number-hrd-scoringbio-copy-number-copy-ratio-segmentationbio-copy-number-allele-specific-copy-numberbio-chipseq-allele-specific-bindingcopy-numbertorch-geometric-graph-neural-networkssequence-analysis
Documentation · 23
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bio-workflow-methods-docwriterGenerate reproducible Methods documentation from workflow run artifacts (Nextflow/Snakemake/CWL), including…scriptsbio-alignment-ioRead, write, and convert multiple sequence alignment files using Biopython Bio.AlignIO. Supports Clustal…scriptswriting-skillsUse when creating new skills, editing existing skills, or verifying skills work before deploymentscriptstac2017-adrQuery TAC 2017 ADR annotated drug labels for adverse drug reactions. Use whenever the user asks about ADRs…scriptscadec-queryQuery the CADEC (CSIRO Adverse Drug Event Corpus). Use whenever the user asks about adverse drug event…scriptsskill-builderScaffold a new ClawBio skill from a spec file (JSON/YAML) or interactively — generates SKILL.md, Python…scriptsbio-experimental-design-sample-sizeEstimates required sample sizes for differential expression, ChIP-seq, methylation, and proteomics studies.…Presentation Skills IndexSkills for creating presentations, slides, and visual documentation.combraintfUse this model doc whenever the user wants to run Com-BrainTF (Community-aware Brain Transformer) for fMRI…
detrendingfilteringfm_appglmhierarchicalkmeanslggnnpaper-writingspacenetsvmacademic-slidespaper-planningibgnnarticle-writing
Security · 16
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ai-scientist-evaluatorCritically review, score, compare, and rank one or more AI scientist outputs for biology, bioinformatics…scriptsclinical-variant-reporterClassify germline variants from VCF/BCF files according to the ACMG/AMP 2015 28-criteria evidence framework…scriptsbio-splicing-qcAssesses RNA-seq data quality specifically for alternative splicing analysis. QC layers include experimental…scriptsharness-coreCore harness library providing standardized self-verification, checkpoint management, drift detection, and…scriptsgwas-databaseNHGRI-EBI GWAS Catalog REST API for SNP-trait associations from published GWAS. Query studies, associations…shap-model-explainabilityModel interpretability via SHAP (Shapley values from game theory). Covers explainer choice (Tree, Deep…dailymed-databaseQuery FDA drug labels (DailyMed) via REST API. Search structured product labels (SPLs) by name, NDC, set ID…ddinter-databaseQuery DDInter drug-drug interactions via REST API (1.7M+ interactions, 2,400+ drugs). Search by drug name/ID…emdb-databaseLook up EMDB cryo-EM density maps and fitted atomic models via the entry REST API + EBI Search WS. Fetch…
evomath-taogtopdb-databaseunichem-databasebiorxiv-databaseclinpgx-databasedetect_common_wetlab_errorsegocentric_view_to_structured_log
Media & Video · 16
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bio-clip-seq-ago-clip-mirna-targetsIdentify direct miRNA-target interactions from AGO HITS-CLIP, AGO-CLEAR-CLIP (chimeric reads), HEAP…scriptsbio-clip-seq-m6a-clipMap N6-methyladenosine (m6A) RNA modifications at single-nucleotide resolution using miCLIP (Linder 2015)…scriptsbio-clip-seq-clip-preprocessingPreprocess CLIP-seq reads (eCLIP, iCLIP, iCLIP2, iCLIP3, irCLIP, PAR-CLIP, FLASH) with protocol-specific UMI…scriptsbio-workflows-clip-pipelineEnd-to-end CLIP-seq pipeline from FASTQ to ENCODE-compliant binding sites, single-nucleotide crosslink maps…scriptsbio-clip-seq-clip-motif-analysisDiscover RBP binding motifs from CLIP-seq peaks or single-nucleotide crosslink sites using HOMER…scriptsbio-clip-seq-clip-alignmentAlign preprocessed CLIP-seq reads (eCLIP, iCLIP, iCLIP2, PAR-CLIP) to genome with STAR or bowtie2 using…scriptsbio-clip-seq-stamp-antibody-freeProfiles RNA-binding protein targets without antibody or UV crosslinking using STAMP (APOBEC1-RBP fusion…scriptsbio-clip-seq-differential-clipIdentify differentially bound regions across CLIP-seq conditions (knockdown vs control, treatment vs vehicle…bio-clip-seq-binding-site-annotationAnnotate CLIP-seq peaks or crosslink sites to RNA features (5'UTR, CDS, 3'UTR, intron, splice junction…
opencv-bioimage-analysisscikit-image-processingtrackpy-particle-trackinggaussian_splatting_scene_descriptiongenerate_cell_analysis_chartsprotocol_video_matchingrealtime_protocol_guidance_prompts
DevOps & Cloud · 9
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bio-sra-dataDownload raw sequencing reads from NCBI SRA using sra-tools (prefetch, fasterq-dump, vdb-validate) or the ENA…scriptsbio-causal-genomics-genetic-correlationEstimate bivariate genetic correlation (rg) between traits from GWAS summary statistics or individual-level…scriptslatchbio-integrationLatch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators…bio-workflow-management-nextflow-pipelinesCreate scalable, containerized bioinformatics pipelines with Nextflow DSL2 supporting Docker, Singularity…bio-workflow-management-wdl-workflowsCreate portable bioinformatics pipelines with Workflow Description Language (WDL) using Cromwell or miniwdl…compute-env-setupSet up a compute environment on a remote provider so Claude Science jobs can run there. Covers direct…docker-env-managerUse this skill whenever the user wants to pull, run, build, compose, list, prune, manage, or otherwise handle…qsiprep-toolUse this skill whenever the user wants to run QSIPrep (BIDS App) for diffusion MRI (DWI) preprocessing with…nextflow-workflow-engineDataflow workflow engine for scalable bioinformatics pipelines. Defines processes (containerized tasks)…
Frontend · 8
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Paper Writing Skills IndexSkills for the Paper Write Team: report and academic templates for HTML/PDF rendering. Each template file is…LiveView Skills IndexSkills for opening and driving agent-controllable visualization components in the Pantheon UI sidebar —…agent-browserBrowser automation via agent-browser CLI for web navigation, form filling, screenshots, scraping, login…dictlearningUse this model doc whenever the user wants to perform resting-state network decomposition using DictLearning.…arboreto-grn-inferenceGRN inference from expression via GRNBoost2 (gradient boosting) or GENIE3 (Random Forest). Load matrix…icaUse this model doc whenever the user wants to perform resting-state network decomposition using ICA. This is…feishu-rich-cardSend rich interactive cards with embedded images in Feishu group chats. Use when reporting progress, sharing…svg-ui-templatesGenerate professional SVG UI panels for structured information display. Use when presenting lists, task…
Other · 290
gwas-lookupFederated variant lookup across 9 genomic databases — GWAS Catalog, Open Targets, PheWeb (UKB, FinnGen, BBJ)…scriptsclinical-trial-finderFind clinical trials for a gene, variant, or condition from ClinicalTrials.gov + EUCTR, with FHIR R4 outputscriptsclinical-decision-supportGenerate professional clinical decision support (CDS) documents for pharmaceutical and clinical research…writesscriptsnotebooksAuthor, execute, and deliver reproducible analysis notebooks in marimo (default) or Jupyter, with all cells…scriptsremote-compute-modalRun GPU jobs on the user's own Modal account via host.compute.create('byoc:modal', ...). Covers the…scriptstooluniverse-gene-enrichmentPerform comprehensive gene enrichment and pathway analysis using gseapy (ORA and GSEA), PANTHER, STRING…scriptsstruct-predictorProtein structure prediction with Boltz-2. Accepts YAML inputs (single protein or multi-chain complex), runs…scriptstooluniverse-drug-drug-interactionComprehensive drug-drug interaction (DDI) prediction and risk assessment. Analyzes interaction mechanisms…scriptsillumina-bridgeImport DRAGEN-exported Illumina result bundles into ClawBio for local tertiary analysis and downstream…scripts
genome-comparetooluniverse-systems-biologytooluniverse-gwas-snp-interpretationomics-target-evidence-mapperdiff-visualizerarchaic-introgressionbio-causal-genomics-fine-mappingrdkitaffinity-proteomicsbio-alignment-pairwisepubmed-summarisertarget-validation-scorerrnaseq-detooluniverse-gwas-study-explorertooluniverse-gwas-finemapping27_ATC_DDDbio-alignment-trimmingdailymed-query48_LTKBbio-alignment-structuraldrkg-querydrugcombdb-queryoregano-queryDrug-Repurposing-Hub+ 257 more
About this collection
How many skills does BioTender-max/awesome-bio-agent-skills publish?

1,012 that pass our gate — each has a real description and a SKILL.md we could read. The repository actually contains 1,705 SKILL.md files, but 70 of them are the same skills republished in other folders, so we count things rather than copies.

How do I install one?

Every skill page carries its own command — `npx skills add BioTender-max/awesome-bio-agent-skills --skill <name> --agent claude-code`. Swap the agent for codex, cursor or copilot.

Are these skills able to change my files?

16 of them declare write access (Bash, Write or Edit) in their allowed-tools. That is the author's own declaration, shown on each skill page — worth reading before you install something that can modify a project.

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