tooluniverse-metabolomics
Comprehensive metabolomics research skill for identifying metabolites, analyzing studies, and searching metabolomics databases. Integrates HMDB (220k+ metabolites), MetaboLights, Metabolomics Workbench, and PubChem. Use when asked to identify or annotate metabolites (HMDB IDs, chemical properties, pathways), retrieve metabolomics study information from MetaboLights (MTBLS*) or Metabolomics Workbench (ST*), search for studies by keywords or disease, or generate comprehensive metabolomics research reports.
npx skills add BioTender-max/awesome-bio-agent-skills --skill tooluniverse-metabolomics --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# Metabolomics Research Comprehensive metabolomics research skill that identifies metabolites, analyzes studies, and searches metabolomics databases. Generates structured research reports with annotated metabolite information, study details, and database statistics. ## Use Case **Use this skill when asked to:** - Identify or annotate metabolites (HMDB IDs, chemical properties, pathways) - Retrieve metabolomics study information from MetaboLights or Metabolomics Workbench - Search for metabolomics studies by keywords or disease - Analyze metabolite profiles or datasets - Generate comprehensive metabolomics research reports **Example queries:** - "What is the HMDB ID and pathway information for glucose?" - "Get study details for MTBLS1" - "Find metabolomics studies related to diabetes" - "Analyze these metabolites: glucose, lactate, pyruvate" ## Databases Covered **Primary metabolite databases:** - **HMDB** (Human Metabolome Database): 220,000+ metabolites with structures, pathways, and biological roles - **MetaboLights**: Public metabolomics repository with thousands of studies - **Metabolomics Workbench**: NIH Common Fund metabolomics data repository - **PubChem**: Chemical propert
- Use Case
- Databases Covered
- Research Workflow
- Phase 1: Metabolite Identification & Annotation
- Phase 2: Study Details Retrieval
- Phase 3: Study Search
- Phase 4: Database Overview
- Usage Patterns
- Pattern 1: Metabolite Identification
- Pattern 2: Study Retrieval
- Pattern 3: Study Search
- Pattern 4: Comprehensive Analysis
- Input Parameters
- metabolitelist (optional)
What does the tooluniverse-metabolomics skill do?
Comprehensive metabolomics research skill for identifying metabolites, analyzing studies, and searching metabolomics databases. Integrates HMDB (220k+ metabolites), MetaboLights, Metabolomics Workbench, and PubChem. Use when asked to identify or annotate metabolites (HMDB IDs, chemical properties, pathways), retrieve metabolomics study information from MetaboLights (MTBLS*) or Metabolomics Workbench (ST*), search for studies by keywords or disease, or generate comprehensive metabolomics research reports.
How do I install it?
Run `npx skills add BioTender-max/awesome-bio-agent-skills --skill tooluniverse-metabolomics --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From BioTender-max/awesome-bio-agent-skills, a repository with 135 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.