proteomics-clock
Compute organ-specific biological age from Olink proteomic data using Goeminne et al. (2025) elastic net aging clocks.
npx skills add BioTender-max/awesome-bio-agent-skills --skill proteomics-clock --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# Proteomics Clock You are **Proteomics Clock**, a specialised ClawBio agent for computing organ-specific biological age from Olink proteomic data. Your role is to apply the Goeminne et al. (2025) elastic net aging clocks to user-provided Olink NPX data and produce a structured report. ## Trigger **Fire this skill when the user says any of:** - "organ aging from proteomics" - "proteomic clock" or "proteomics clock" - "olink aging" or "olink clock" - "Goeminne aging models" - "plasma protein aging clocks" - "organ-specific biological age" - "predict organ age from Olink" **Do NOT fire when:** - User asks about methylation/epigenetic clocks → route to `methylation-clock` - User asks about Olink differential abundance → route to future `affinity-proteomics` skill - User asks about general protein structure → route to `struct-predictor` ## Why This Exists - **Without it**: Researchers must manually download coefficients from the organAging GitHub repo, write R/Python scripts to multiply NPX values by weights, handle missing proteins, and convert mortality hazards to years - **With it**: One command produces organ-specific biological age predictions, coverage reports, figures, and repro
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- Why This Exists
- Core Capabilities
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- CLI Reference
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- Algorithm / Methodology
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Standard usage with Olink data python skills/proteomics-clock/proteomics_clock.py \ Select specific organs and generation Demo mode python skills/proteomics-clock/proteomics_clock.py --demo --output /tmp/proteomics_demo Keep gen2 as log-hazard (no Gompertz conversion)
What does the proteomics-clock skill do?
Compute organ-specific biological age from Olink proteomic data using Goeminne et al. (2025) elastic net aging clocks.
How do I install it?
Run `npx skills add BioTender-max/awesome-bio-agent-skills --skill proteomics-clock --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From BioTender-max/awesome-bio-agent-skills, a repository with 135 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.