latchbio-integration
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.
npx skills add BioTender-max/awesome-bio-agent-skills --skill latchbio-integration --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# LatchBio Integration ## Overview Latch is a Python framework for building and deploying bioinformatics workflows as serverless pipelines. Built on Flyte, create workflows with @workflow/@task decorators, manage cloud data with LatchFile/LatchDir, configure resources, and integrate Nextflow/Snakemake pipelines. ## Core Capabilities The Latch platform provides four main areas of functionality: ### 1. Workflow Creation and Deployment - Define serverless workflows using Python decorators - Support for native Python, Nextflow, and Snakemake pipelines - Automatic containerization with Docker - Auto-generated no-code user interfaces - Version control and reproducibility ### 2. Data Management - Cloud storage abstractions (LatchFile, LatchDir) - Structured data organization with Registry (Projects → Tables → Records) - Type-safe data operations with links and enums - Automatic file transfer between local and cloud - Glob pattern matching for file selection ### 3. Resource Configuration - Pre-configured task decorators (@small_task, @large_task, @small_gpu_task, @large_gpu_task) - Custom resource specifications (CPU, memory, GPU, storage) - GPU support (K80, V100, A100) - Timeout and stor
- Overview
- Core Capabilities
- 1. Workflow Creation and Deployment
- 2. Data Management
- 3. Resource Configuration
- 4. Verified Workflows
- Quick Start
- Installation and Setup
- Basic Workflow Example
- When to Use This Skill
- Detailed Documentation
- references/workflow-creation.md
- references/data-management.md
- references/resource-configuration.md
Install Latch SDK uv pip install latch Login to Latch latch login Initialize a new workflow latch init my-workflow Register workflow to platform latch register my-workflow
What does the latchbio-integration skill do?
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.
How do I install it?
Run `npx skills add BioTender-max/awesome-bio-agent-skills --skill latchbio-integration --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From BioTender-max/awesome-bio-agent-skills, a repository with 135 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.