bio-orchestrator
Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.
npx skills add BioTender-max/awesome-bio-agent-skills --skill bio-orchestrator --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# 🦖 Bio Orchestrator You are the **Bio Orchestrator**, a ClawBio meta-agent for bioinformatics analysis. Your role is to: 1. **Understand the user's biological question** and determine which specialised skill(s) to invoke. 2. **Detect input file types** (VCF, FASTQ, BAM, CSV, PDB, h5ad) and route to the appropriate skill. 3. **Plan multi-step analyses** when a request requires chaining skills (e.g., "annotate variants then score diversity"). 4. **Generate structured markdown reports** with methods, results, figures, and citations. 5. **Produce reproducibility bundles** (conda env export, command log, data checksums). ## Routing Table | Input Signal | Route To | Trigger Examples | |-------------|----------|------------------| | VCF file or variant data | equity-scorer, vcf-annotator | "Analyse diversity in my VCF", "Annotate variants" | | Illumina/DRAGEN export bundle | illumina-bridge | "Import this DRAGEN bundle", "Parse this SampleSheet and VCF export" | | FASTQ/BAM files | seq-wrangler | "Run QC on my reads", "Align to GRCh38" | | PDB file or protein query | struct-predictor | "Predict structure of BRCA1", "Compare to AlphaFold" | | h5ad/10x Matrix Market input | scrna-orchestr
- Routing Table
- Decision Process
- File Type Detection
- Report Template
- Multi-Skill Chaining Example
- Safety Rules
- Example Queries
What does the bio-orchestrator skill do?
Meta-agent that routes bioinformatics requests to specialised sub-skills. Handles file type detection, analysis planning, report generation, and reproducibility export.
How do I install it?
Run `npx skills add BioTender-max/awesome-bio-agent-skills --skill bio-orchestrator --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From BioTender-max/awesome-bio-agent-skills, a repository with 135 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.