wes-clinical-report-es
Generates professional clinical PDF reports in Spanish from WES (Whole Exome Sequencing) data with clinical interpretation, pharmacogenomic alerts, and follow-up recommendations.
npx skills add BioTender-max/awesome-bio-agent-skills --skill wes-clinical-report-es --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# Informe Clinico WES en Espanol Skill for generating professional clinical PDF reports in Spanish from whole exome sequencing (WES) data. Designed for Novogene WES data (GATK + ANNOVAR pipeline) but adaptable to any WES pipeline with equivalent annotations. Translates all section headings, table headers, cell values, and interpretive text from English markdown input to Spanish PDF output. ## Trigger **Fire this skill when the user says any of:** - "informe clinico WES" - "generar informe exoma en espanol" - "clinical report in Spanish" - "Novogene report Spanish" - "exome PDF report Spanish" - "Predice/Inbiomedic report" **Do NOT fire when:** - User asks for an English report (use `wes-clinical-report-en`) - User asks for variant annotation only (use `variant-annotation`) - User asks for ACMG classification only (use `clinical-variant-reporter`) ## Scope One skill, one task: convert WES markdown reports (English input) into professional Spanish-language clinical PDFs with full translation and clinical interpretation. ## Workflow 1. Parse WES markdown report (structured sections 1-7) 2. Extract KPI metrics from Exome Summary 3. Extract pathogenic variants, PGx alerts, rare damaging
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Generate reports for all samples python skills/wes-clinical-report-es/wes_clinical_report_es.py \ Generate report for a single sample Demo with default Novogene data python skills/wes-clinical-report-es/wes_clinical_report_es.py --demo
What does the wes-clinical-report-es skill do?
Generates professional clinical PDF reports in Spanish from WES (Whole Exome Sequencing) data with clinical interpretation, pharmacogenomic alerts, and follow-up recommendations.
How do I install it?
Run `npx skills add BioTender-max/awesome-bio-agent-skills --skill wes-clinical-report-es --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From BioTender-max/awesome-bio-agent-skills, a repository with 135 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.