Agent skill · Code Review & Quality

bio-logic

Evaluate scientific rigor, methods, biases, and evidence quality for claims, papers, and study designs.

BioTender-maxgithub.com/BioTender-maxGitHub ↗
claude-codeNOASSERTION
Install
npx skills add BioTender-max/awesome-bio-agent-skills --skill bio-logic --agent claude-code

Same command for any agent — swap --agent for codex, cursor, copilot.

Facts
Files in the skill folder: 8
SKILL.md size: 8 KB
Bundled scripts: none
Path: skills/omics/bio-logic/SKILL.md
Open the folder on GitHub →
Where it comes from
Stars: 135
Language: Python

Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.

From the SKILL.md

# Bio-Logic: Scientific Reasoning Evaluation Use structured frameworks to evaluate scientific claims, methodology, and evidence strength. ## Instructions 1. Identify the task (claim assessment, paper critique, study design review, project interpretation, or hypothesis revision). 2. For project work, maintain a hypothesis register with at least 5 distinct active hypotheses until the project is no longer exploratory. 3. After each major intermediate result, reflect on what changed, revise hypothesis status, and identify the next discriminating check. 4. When findings need context, pair this reasoning with a literature-search skill such as `/polars-dovmed`, then revise hypotheses against the literature. 5. Apply the relevant checklist below. 6. Structure output using the provided format. ### Project Hypothesis Loop Use this loop for omics projects, unexpected results, exploratory analyses, and any request that asks what results mean. 1. **Initialize**: create at least 5 working hypotheses. Include biological mechanisms, technical artifacts, null explanations, sampling/batch effects, and annotation/database artifacts where relevant. 2. **Build an analysis playbook**: search the literat

What's inside
Steps it walks through
  1. Instructions
  2. Project Hypothesis Loop
  3. Critique Checklist
  4. Claim Assessment
  5. Output Format
  6. Project Reasoning Output Format
  7. Quick Reference
  8. Input Requirements
  9. Output
  10. Quality Gates
  11. Examples
  12. Example 1: Quick Paper Critique
  13. Example 2: Claim Assessment
  14. Troubleshooting
Ships with 7 files
  • eval.yaml
  • fixtures/study_summary.md
  • references/biases.md
  • references/design.md
  • references/evidence.md
  • references/fallacies.md
  • references/stats.md
More from awesome-bio-agent-skills
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About this skill
What does the bio-logic skill do?

Evaluate scientific rigor, methods, biases, and evidence quality for claims, papers, and study designs.

How do I install it?

Run `npx skills add BioTender-max/awesome-bio-agent-skills --skill bio-logic --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.

Where does this skill come from?

From BioTender-max/awesome-bio-agent-skills, a repository with 135 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.

Is a popular skill a good skill?

Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.

Keep going