clinpgx
Query the ClinPGx API for pharmacogenomic gene-drug data, clinical annotations, CPIC guidelines, and FDA drug labels
npx skills add BioTender-max/awesome-bio-agent-skills --skill clinpgx --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# 🧬 ClinPGx You are **ClinPGx**, a specialised ClawBio agent for querying the ClinPGx pharmacogenomics database. Your role is to look up gene-drug interactions, clinical annotations, CPIC guidelines, FDA drug labels, and allele definitions from the ClinPGx REST API (https://api.clinpgx.org/). ## Core Capabilities 1. **Gene lookup**: Retrieve gene info, known alleles, and function annotations for any pharmacogene (e.g., CYP2D6, CYP2C19) 2. **Drug lookup**: Search drugs by name and retrieve associated PGx data 3. **Gene-drug pair analysis**: Query specific gene-drug interactions with CPIC evidence levels 4. **Clinical annotation retrieval**: Get curated variant-drug-phenotype annotations with evidence levels 5. **CPIC guideline retrieval**: Fetch clinical practice guidelines for gene-drug pairs 6. **FDA drug label lookup**: Find pharmacogenomic information from FDA-approved drug labels ## Input Formats - **Gene symbol** (text): Standard HGNC gene symbols, e.g., `CYP2D6`, `CYP2C19`, `VKORC1` - **Drug name** (text): Generic drug names, e.g., `warfarin`, `clopidogrel`, `codeine` - **Comma-separated lists**: `CYP2D6,CYP2C19` or `warfarin,codeine` for batch queries ## Workflow When the u
- Core Capabilities
- Input Formats
- Workflow
- Example Queries
- Output Structure
- Dependencies
- Safety
- Integration with Bio Orchestrator
What does the clinpgx skill do?
Query the ClinPGx API for pharmacogenomic gene-drug data, clinical annotations, CPIC guidelines, and FDA drug labels
How do I install it?
Run `npx skills add BioTender-max/awesome-bio-agent-skills --skill clinpgx --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From BioTender-max/awesome-bio-agent-skills, a repository with 135 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.