Agent skills

Skills matching “cli”

Read straight from the source repositories, not from submitted listings. Every skill shows what it does, what is inside, where it came from — and whether attention around its source is actually growing.

Toolclaude-code 29,140codex 4,755cursor 3,111copilot 976windsurf 55cline 34
CategoryWorkflow & Productivity 4,979AI & Agents 3,037Data & Analytics 2,345Code Review & Quality 1,376Backend & API 1,244Security 1,194Design & Presentation 1,154Documentation 965Content & Marketing 916Testing & QA 777DevOps & Cloud 576Databases 550Frontend 469Business & Finance 328Media & Video 257Other 9,833
515 found
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az-cliUse the Azure CLI (`az`) to manage Azure resources from the command line. Trigger this skill whenever the user asks to create…Code-and-Sortsscriptsrclone-cliRclone command-line cloud storage manager reference and usage guide. Use this skill whenever the user mentions rclone, or any…sickn33scriptspbir-cliThis skill should be used whenever the user mentions "pbir", "pbir-cli", "Power BI reports", or "PBI reports", works with .pbir…data-goblinscriptsfabric-cliExpert guidance for using the Fabric CLI (`fab`) to fully interact with Fabric workspaces, items, and configuration.…data-goblinscriptsadd-clidashAdd clidash — a zero-dependency, read-only web dashboard that derives its tabs and tables at runtime from any CLI that lists…nanocoaiscriptsclinical-reportsCreate safety-bounded draft structures and run local deterministic checks for clinical case, diagnostic, trial, safety, and…K-Dense-AIscriptsclinical-reportsWrite comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab)…FreedomIntelligencewritesscriptsclinical-reportsWrite comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab)…LeonChaoXwritesscriptsclinical-decision-supportPrepare and validate research-only clinical decision-support evaluation, evidence-profile, cohort, survival, biomarker/model…K-Dense-AIscriptsclinical-decision-supportGenerate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including…BioTender-maxwritesscriptsclinical-trial-finderFind clinical trials for a gene, variant, or condition from ClinicalTrials.gov + EUCTR, with FHIR R4 outputBioTender-maxscriptsclinical-decision-supportGenerate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including…foryourhealth111-pixelwritesscriptsclinical-decision-supportGenerate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including…LeonChaoXwritesscriptscodex-cli-bridgeBridge between Claude Code and OpenAI Codex CLI - generates AGENTS.md from CLAUDE.md, provides Codex CLI execution helpers, and…alirezarezvaniscriptsgolang-cliGolang CLI application development. Use when building, modifying, or reviewing a Go CLI tool — especially for command structure…samberwritesscriptsclinical-researchUse when designing a prospective clinical study before submission — selecting and classifying endpoints (primary / key-secondary…alirezarezvaniscriptsclinical-trial-protocol-skillGenerate clinical trial protocols for medical devices or drugs. This skill should be used when users say "Create a clinical trial…FreedomIntelligencescriptstooluniverse-clinical-trial-designStrategic clinical trial design feasibility assessment using ToolUniverse. Evaluates patient population sizing, biomarker…BioTender-maxscriptsopenserv-clientComplete guide to using @openserv-labs/client for managing agents, workflows, triggers, and tasks on the OpenServ Platform.…internet-courtscriptsclinical-variant-reporterClassify germline variants from VCF/BCF files according to the ACMG/AMP 2015 28-criteria evidence framework and generate…BioTender-maxscriptssuede-clip-to-guideSuede-owned short-to-long content funnel blueprint. Use when turning a video, clip, interview moment, talk excerpt, screen…JasonColapietroscriptsclient-instruction-scheduleBuild a client instruction schedule — a plain-English, Scott Schedule-style Word table that gathers a struggling client's…lawve-aiscriptspharmgkb-clinpgxQuery ClinPGx (PharmGKB) and CPIC for pharmacogenomics data. Use whenever the user asks about gene-drug interactions…BioTender-maxscriptsclinpgxQuery the ClinPGx API for pharmacogenomic gene-drug data, clinical annotations, CPIC guidelines, and FDA drug labelsBioTender-maxscriptsclinpgxQuery the ClinPGx API for pharmacogenomic gene-drug data, clinical annotations, CPIC guidelines, and FDA drug labelsFreedomIntelligencescriptsbio-ncbi-datasets-cliDownload genome assemblies, gene records, and ortholog data from NCBI using the modern Datasets v2 CLI (replaces…BioTender-maxscriptstooluniverse-clinical-trial-matchingAI-driven patient-to-trial matching for precision medicine and oncology. Given a patient profile (disease, molecular alterations…BioTender-maxscriptswes-clinical-report-enGenerates professional clinical PDF reports in English from WES (Whole Exome Sequencing) data with clinical interpretation…BioTender-maxscriptswes-clinical-report-esGenerates professional clinical PDF reports in Spanish from WES (Whole Exome Sequencing) data with clinical interpretation…BioTender-maxscriptsbio-clinical-databases-polygenic-riskCalculate polygenic risk scores using PRSice-2, LDpred2, or PRS-CS from GWAS summary statistics. Use when predicting disease risk…FreedomIntelligencescriptsbio-clinical-databases-somatic-signaturesExtract and analyze mutational signatures from somatic variants using SigProfiler or MutationalPatterns to characterize mutagenic…FreedomIntelligencescriptsbio-clinical-biostatistics-categorical-testsTests associations between categorical variables in clinical data using chi-square, Fisher's exact, Boschloo…BioTender-maxscriptscli-ux-testerExpert UX evaluator for CLIs, terminal tools, and developer APIs. Use when reviewing command usability, error messages, help…jeremylongshorewritesscriptsbio-clinical-databases-hla-typingCalls HLA class I and class II alleles at 2/4/6/8-field resolution from WGS/WES/RNA-seq/long-read data using OptiType, HLA-LA…BioTender-maxscriptsbio-clinical-databases-polygenic-riskConstructs and validates polygenic risk scores using LDpred2-auto, SBayesRC, MegaPRS, PRS-CS, PROSPER, MUSSEL, BridgePRS…BioTender-maxscriptsrun-interactive-cli-sessionPerform interactive testing on Kobiton devices using natural language. Translates user intents into CLI commands - WebDriver…jeremylongshorewritesscriptsbio-clinical-databases-somatic-signaturesExtracts and assigns COSMIC v3.4 mutational signatures (84 SBS / 11 DBS / 18 ID / 24 CN / 16 SV) from somatic VCFs using…BioTender-maxscriptsbio-clinical-databases-acmg-classificationApplies ACMG/AMP 2015 framework with ClinGen SVI specifications, Tavtigian 2018/2020 Bayesian point system, Abou Tayoun 2018 PVS1…BioTender-maxscriptsbio-clip-seq-ago-clip-mirna-targetsIdentify direct miRNA-target interactions from AGO HITS-CLIP, AGO-CLEAR-CLIP (chimeric reads), HEAP (Halo-Ago2 mouse), chimeric…BioTender-maxscriptsbio-alignment-amplicon-clippingTrim PCR primers from aligned reads in amplicon-panel BAMs using samtools ampliconclip. Use when processing SARS-CoV-2 ARTIC…BioTender-maxscriptsbio-clinical-databases-clinvar-lookupQuery ClinVar for variant pathogenicity classifications, review status, and disease associations via REST API or local VCF. Use…FreedomIntelligencescriptsbio-clinical-databases-dbsnp-queriesQuery dbSNP for rsID lookups, variant annotations, and cross-references to other databases. Use when mapping between rsIDs and…FreedomIntelligencescriptsbio-clinical-databases-gnomad-frequenciesQuery gnomAD for population allele frequencies to assess variant rarity. Use when filtering variants by population frequency for…FreedomIntelligencescriptsbio-clinical-databases-hla-typingCall HLA alleles from NGS data using OptiType, HLA-HD, or arcasHLA for immunogenomics applications. Use when determining HLA…FreedomIntelligencescriptsbio-clinical-databases-myvariant-queriesQuery myvariant.info API for aggregated variant annotations from multiple databases (ClinVar, gnomAD, dbSNP, COSMIC, etc.) in a…FreedomIntelligencescriptsbio-clinical-databases-pharmacogenomicsQuery PharmGKB and CPIC for drug-gene interactions, pharmacogenomic annotations, and dosing guidelines. Use when predicting drug…FreedomIntelligencescriptsbio-clinical-databases-tumor-mutational-burdenCalculate tumor mutational burden from panel or WES data with proper normalization and clinical thresholds. Use when assessing…FreedomIntelligencescriptsbio-clinical-databases-variant-prioritizationFilter and prioritize variants by pathogenicity, population frequency, and clinical evidence for rare disease analysis. Use when…FreedomIntelligencescripts
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How the catalog works
What is an agent skill?

A folder with a SKILL.md inside — instructions, and often scripts and assets, that an AI agent loads when the task matches. Claude Code, Codex, Cursor and Copilot all read the same format, so one skill usually works across them.

Where does this catalog come from?

We read 660 source repositories straight from their file trees rather than from submitted listings — what you see is what is actually published. 98 repositories were rejected because they advertise skills but contain none: link lists, not folders.

Why is there no install counter?

Because install counts live in the registry that serves `npx skills add`, and that is not ours — publishing a number we cannot verify would be worse than showing none. Instead we show where a skill comes from and whether attention around its source is actually growing, measured from our own weekly snapshots.

Do you deduplicate?

Yes, and it matters more than expected. Aggregator repositories republish the same skill in several places — one source carried 6,317 SKILL.md files for 2,001 actual skills. We collapse by folder name and keep the canonical copy, so the catalog counts things, not copies.

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