bio-clinical-databases-dbsnp-queries
Query dbSNP for rsID lookups, variant annotations, and cross-references to other databases. Use when mapping between rsIDs and genomic coordinates or retrieving basic variant information.
npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-dbsnp-queries --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
## Version Compatibility Reference examples tested with: BioPython 1.83+, Entrez Direct 21.0+ Before using code patterns, verify installed versions match. If versions differ: - Python: `pip show <package>` then `help(module.function)` to check signatures If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying. # dbSNP Queries **"Look up variant information by rsID"** → Retrieve variant annotations, genomic coordinates, and cross-references to ClinVar/gnomAD from dbSNP using REST API queries. - Python: `myvariant.MyVariantInfo().getvariant('rs12345')` ## Query rsID via myvariant.info **Goal:** Retrieve variant information including dbSNP, ClinVar, and gnomAD annotations by rsID. **Approach:** Query myvariant.info with the rsID and request specific annotation fields. ```python import myvariant mv = myvariant.MyVariantInfo() def get_rsid_info(rsid): '''Get variant info by rsID''' result = mv.getvariant(rsid, fields=['dbsnp', 'clinvar', 'gnomad_exome']) return result result = get_rsid_info('rs121913527') ``` ## Query via NCBI Entrez **Goal:** Search and fetch dbSNP records directly fro
- Version Compatibility
- Query rsID via myvariant.info
- Query via NCBI Entrez
- Map Coordinates to rsID
- Map rsID to Coordinates
- Batch rsID Lookup
- Parse dbSNP Annotations
- Variant Classes in dbSNP
- Query NCBI Variation Services API
- Related Skills
What does the bio-clinical-databases-dbsnp-queries skill do?
Query dbSNP for rsID lookups, variant annotations, and cross-references to other databases. Use when mapping between rsIDs and genomic coordinates or retrieving basic variant information.
How do I install it?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-clinical-databases-dbsnp-queries --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From FreedomIntelligence/OpenClaw-Medical-Skills, a repository with 2,909 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.