Agent skills

Skills matching “cli”

Read straight from the source repositories, not from submitted listings. Every skill shows what it does, what is inside, where it came from — and whether attention around its source is actually growing.

Toolclaude-code 29,140codex 4,755cursor 3,111copilot 976windsurf 55cline 34
CategoryWorkflow & Productivity 4,979AI & Agents 3,037Data & Analytics 2,345Code Review & Quality 1,376Backend & API 1,244Security 1,194Design & Presentation 1,154Documentation 965Content & Marketing 916Testing & QA 777DevOps & Cloud 576Databases 550Frontend 469Business & Finance 328Media & Video 257Other 9,833
515 found
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bio-variant-calling-clinical-interpretationClinical variant interpretation using ClinVar, ACMG guidelines, and pathogenicity predictors. Prioritize variants for diagnostic…FreedomIntelligencescriptsbio-clinical-biostatistics-cdisc-dataReads, validates, and prepares CDISC SDTM and ADaM clinical trial data for analysis. Covers SDTM domain joins (DM, AE, EX, VS…BioTender-maxscriptsbio-clinical-biostatistics-survival-analysisPerforms time-to-event analysis for clinical trials including Cox proportional hazards regression with PH diagnostics, restricted…BioTender-maxscriptsbio-variant-calling-clinical-interpretationClinical variant interpretation using ClinVar, ACMG guidelines, and pathogenicity predictors. Prioritize variants for diagnostic…BioTender-maxscriptsbio-workflows-clinical-trial-pipelineEnd-to-end clinical trial analysis workflow from CDISC SDTM/ADaM loading through ICH E9(R1) estimand-driven primary analysis to…BioTender-maxscriptsclinical-trials-searchSearch ClinicalTrials.gov with natural language queries. Find clinical trials, enrollment, and outcomes using Valyu semantic…FreedomIntelligencescriptsclinicaltrials-databaseQuery ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT…FreedomIntelligencescriptsclinicaltrials-databaseQuery ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT…LeonChaoXscriptsclinpgx-databaseAccess ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions…FreedomIntelligencescriptsclinpgx-databaseAccess ClinPGx pharmacogenomics data (successor to PharmGKB). Query gene-drug interactions, CPIC guidelines, allele functions…LeonChaoXscriptsbio-clinical-databases-clinvar-lookupQueries ClinVar for variant pathogenicity classifications, ClinGen VCEP curations, and somatic-vs-germline interpretations via…BioTender-maxscriptsbio-clip-seq-clip-alignmentAlign preprocessed CLIP-seq reads (eCLIP, iCLIP, iCLIP2, PAR-CLIP) to genome with STAR or bowtie2 using crosslink-preserving…BioTender-maxscriptsbio-clip-seq-clip-deep-learningPredict RBP binding from RNA sequence using deep learning models (RBPNet sequence-to-signal, RNAProt RNN, GraphProt2 GCN with…BioTender-maxscriptsbio-clip-seq-clip-motif-analysisDiscover RBP binding motifs from CLIP-seq peaks or single-nucleotide crosslink sites using HOMER, MEME/STREME, kpLogo, mCross…BioTender-maxscriptsbio-clip-seq-clip-peak-callingCall protein-RNA binding sites from CLIP-seq BAM with CLIPper, PureCLIP, Skipper, Piranha, omniCLIP, CTK, CLAM, or Paraclu. Use…BioTender-maxscriptsbio-workflows-clip-pipelineEnd-to-end CLIP-seq pipeline from FASTQ to ENCODE-compliant binding sites, single-nucleotide crosslink maps, annotation, motifs…BioTender-maxscriptsbio-clip-seq-clip-preprocessingPreprocess CLIP-seq reads (eCLIP, iCLIP, iCLIP2, iCLIP3, irCLIP, PAR-CLIP, FLASH) with protocol-specific UMI extraction, adapter…BioTender-maxscriptsbio-clip-seq-clip-qcComprehensive quality control for CLIP-seq libraries (eCLIP, iCLIP, iCLIP2, PAR-CLIP) covering library complexity (preseq), FRiP…BioTender-maxscriptsbio-clip-seq-crosslink-site-detectionDetect single-nucleotide crosslink (CL) sites in CLIP-seq data using truncation patterns (iCLIP/eCLIP CITS), crosslink-induced…BioTender-maxscriptsbio-clinical-databases-dbsnp-queriesResolves rsIDs, navigates RsMergeArch/SNPHistory merge chains, and converts between rsID, SPDI, HGVS, and VCF representations…BioTender-maxscriptsbio-clinical-biostatistics-effect-measuresComputes and interprets treatment effect measures (OR, RR, RD, HR, NNT) with calibrated confidence intervals (Wilson, Newcombe…BioTender-maxscriptsbio-clinical-databases-gnomad-frequenciesQueries gnomAD v4 (807k samples), v3, v2.1.1, and constraint metrics with grpmax FAF95, bottleneck-group exclusion, LOEUF…BioTender-maxscriptsbio-clinical-biostatistics-logistic-regressionPerforms logistic regression for clinical trial outcomes (binary, ordinal, multinomial) with marginal-vs-conditional estimand…BioTender-maxscriptsbio-clip-seq-m6a-clipMap N6-methyladenosine (m6A) RNA modifications at single-nucleotide resolution using miCLIP (Linder 2015), miCLIP2 + m6Aboost…BioTender-maxscriptsmarkdown-nine-grid-clipboardConvert Chinese or mixed-language text, iMandalArt cards, Obsidian 九宮, 表格, Mandala notes, or eight-domain outlines into a…twhsiscriptsbio-clinical-biostatistics-missing-dataImplements missing-data sensitivity analyses for confirmatory clinical trials including MMRM under MAR (with Kenward-Roger…BioTender-maxscriptsbio-clinical-databases-msi-detectionCalls microsatellite instability from WES/WGS/targeted-panel with MSIsensor, MSIsensor-pro, MSIsensor-ct (panel-aware), MSIngs…BioTender-maxscriptsbio-clinical-databases-myvariant-queriesQueries myvariant.info BioThings aggregator for ClinVar, gnomAD, dbSNP, dbNSFP, COSMIC, CADD, and CIViC annotations in batched…BioTender-maxscriptsbio-clinical-databases-pharmacogenomicsQueries PharmGKB / CPIC / DPWG for drug-gene interactions; calls CYP2D6/CYP2C9/CYP2C19/DPYD/TPMT/NUDT15/UGT1A1/SLCO1B1 star…BioTender-maxscriptsbio-clinical-biostatistics-power-sample-sizeComputes sample size and power for clinical trials including continuous, binary, and time-to-event endpoints; superiority…BioTender-maxscriptsbio-clip-seq-stamp-antibody-freeProfiles RNA-binding protein targets without antibody or UV crosslinking using STAMP (APOBEC1-RBP fusion, C-to-U editing)…BioTender-maxscriptsbio-clinical-biostatistics-subgroup-analysisPerforms subgroup and heterogeneous treatment effect (HTE) analyses for clinical trials. Covers Mantel-Haenszel pooling…BioTender-maxscriptsbio-clinical-biostatistics-trial-reportingPrepares statistical reports for clinical trials following CONSORT 2025, SPIRIT 2025, ICH E9(R1) estimands, and FDA 2023…BioTender-maxscriptsbio-clinical-databases-tumor-mutational-burdenCalculates tumor mutational burden from WES/WGS/panel data with Friends of Cancer Research harmonization equations, per-assay…BioTender-maxscriptsbio-clinical-databases-variant-prioritizationPrioritizes rare-disease variants from trio/quad WES/WGS with de novo (DeNovoGear, Triodenovo), compound-heterozygous phasing…BioTender-maxscriptsmuapi-ai-clippingTurn a long video into N viral-ready short clips with a single managed API call. Wraps muapi.ai's `/ai-clipping` endpoint, which…SamurAIGPTscriptspress-clipTurn a live article URL into a press clip that looks like the real coverage — the publication's own logo, fonts, photos and…elvisunscriptsclimate-aligned-contracts-felix-cohenDraft, adapt, and review contracts and clauses aligned with The Chancery Lane Project's methodology for reducing carbon emissions…lawve-aisupabase-cliThis skill should be used when user asks to "use supabase CLI", "supabase init", "supabase start", "run migrations", "deploy edge…fcakyonbailian-cli阿里云百炼 / Aliyun Bailian / DashScope 资源管理与 `bl` CLI hub: 应用调用(bl app)、应用记忆、知识库检索、模型目录/模型列表、用量/额度/配额、免费额度、 工作空间、MCP…modelstudioai20-brief-client-intakeTao brief khach hang dien cho agency (client intake form) — form thu thap thong tin dau vao chi tiet de agency lap ke hoach…minhnv0807tao-finetune-clipCLIP vision-language model for image-text retrieval, zero-shot classification, embedding extraction, ONNX export, and TensorRT…NVIDIAwriteste-cliExpert guidance for the cross-platform Tabular Editor CLI (the `te` binary, currently in preview) that manages Power BI /…data-goblincli-masteryInteractive training for the GitHub Copilot CLI. Guided lessons, quizzes, scenario challenges, and a full reference covering…githubcloudbase-cliCloudBase CLI (tcb, 云开发CLI, Tencent CloudBase命令行) resource management skill. This skill should be used when users need to deploy…TencentCloudBasehasdata-cliCommand-line access to search, scraping, and structured web data.sickn33officecli-skillsUnified OfficeCLI skill for creating, reading, and editing Office files. Use for any .docx, .pptx, or .xlsx task, including Word…mingchen666playwright-cliAutomate browser interactions, test web pages and work with Playwright tests.dyoshikawa
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How the catalog works
What is an agent skill?

A folder with a SKILL.md inside — instructions, and often scripts and assets, that an AI agent loads when the task matches. Claude Code, Codex, Cursor and Copilot all read the same format, so one skill usually works across them.

Where does this catalog come from?

We read 660 source repositories straight from their file trees rather than from submitted listings — what you see is what is actually published. 98 repositories were rejected because they advertise skills but contain none: link lists, not folders.

Why is there no install counter?

Because install counts live in the registry that serves `npx skills add`, and that is not ours — publishing a number we cannot verify would be worse than showing none. Instead we show where a skill comes from and whether attention around its source is actually growing, measured from our own weekly snapshots.

Do you deduplicate?

Yes, and it matters more than expected. Aggregator repositories republish the same skill in several places — one source carried 6,317 SKILL.md files for 2,001 actual skills. We collapse by folder name and keep the canonical copy, so the catalog counts things, not copies.

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