ukb-skill
Use this skill whenever the user wants to analyze already available UK Biobank data for brain-related research, including neurological outcomes, cognitive phenotypes, brain MRI derived phenotypes, survival analysis, subgroup analysis, propensity score analysis, mediation analysis, sensitivity analysis, machine learning, visualization, or manuscript-ready summaries. This skill only covers post-extraction analysis and explicitly excludes RAP access and data download guidance.
npx skills add BioTender-max/awesome-bio-agent-skills --skill ukb-skill --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# UKB Skill (Dataset Layer) ## Overview `ukb-skill` is the NeuroClaw **analysis-layer** skill for **brain-focused UK Biobank downstream research**. This skill is designed for users who already have local UK Biobank tables, derived phenotype tables, or neuroimaging-derived feature matrices and want to run downstream statistical or machine learning analyses. It follows the NeuroClaw hierarchical design principles: - This skill describes **WHAT needs to be analyzed** and **which existing skill should handle each part**. - It contains **no RAP download workflow** and **no cloud export instructions**. - It contains **no direct implementation code** and **no direct shell commands**. - All concrete execution should be delegated through `claw-shell` and related downstream skills. **Core workflow (never bypassed):** 1. Confirm that the user already has accessible UK Biobank-derived local data. 2. Identify the research target: neurological endpoint, cognitive phenotype, brain MRI phenotype, or predictive modeling task. 3. Identify the analysis type: regression, survival analysis, subgroup analysis, propensity score analysis, mediation analysis, sensitivity analysis, machine learning, visuali
- Overview
- Scope Boundaries
- Included
- Excluded
- Benchmark-Facing Default Mainline
- Quick Reference (Common UKB Brain Tasks → Delegation Map)
- Recommended Strategy (Decision Logic)
- Minimal Input Requirements
- For Survival Analysis
- For Cross-Sectional Regression
- For Brain Feature Modeling
- Brain-Relevant UKB Targets
- When to Call This Skill
- Complementary / Related Skills
python skills/ukb-skill/scripts/extract_ukb_phenotype.py \ python skills/ukb-skill/scripts/extract_ukb_phenotype.py --list-variables python skills/ukb-skill/scripts/extract_ukb_cases.py \ python skills/ukb-skill/scripts/extract_ukb_cases.py --list-diseases python skills/ukb-skill/scripts/build_ukb_survival.py \ python skills/ukb-skill/scripts/ukb_qc_summary.py \
What does the ukb-skill skill do?
Use this skill whenever the user wants to analyze already available UK Biobank data for brain-related research, including neurological outcomes, cognitive phenotypes, brain MRI derived phenotypes, survival analysis, subgroup analysis, propensity score analysis, mediation analysis, sensitivity analysis, machine learning, visualization, or manuscript-ready summaries. This skill only covers post-extraction analysis and explicitly excludes RAP access and data download guidance.
How do I install it?
Run `npx skills add BioTender-max/awesome-bio-agent-skills --skill ukb-skill --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From BioTender-max/awesome-bio-agent-skills, a repository with 135 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.