protocolsio-integration
Read, validate, and safely export protocols.io data with current official REST/MCP contracts, or create non-executing mutation plans. The bundled client makes bounded official-host GET requests only with explicit --execute. Use only for tasks explicitly targeting protocols.io or an exact protocols.io protocol version.
npx skills add K-Dense-AI/scientific-agent-skills --skill protocolsio-integration --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# protocols.io Integration Use the exact endpoint version documented for each operation. The official API landing page is still titled “API v3,” but its maintained sections mix **v3** and **v4**. There is no single safe `/api/v3` base to apply to every resource. This skill was refreshed against official sources on **2026-07-23**. ## Operating Contract 1. **Start offline.** Validate credentials/configuration, saved JSON, pagination, or a write plan before making a request. 2. **Require `--execute` for network reads.** Bundled write tooling has no execution mode. 3. **Read only named variables.** Never inspect the full environment, search for `.env` files, traverse parent directories, or accept a token/secret in a command argument, request file, log, traceback, or output. 4. **Use official HTTPS hosts only.** Core reads use `www.protocols.io` (the docs also show the bare host). Organization exports use the customer's explicit `<subdomain>.protocols.io` origin. Reject redirects and disable ambient proxy discovery so bearer credentials are not routed unexpectedly. 5. **Distinguish public content from anonymous API access.** A client token is documented for public data. Most REST endpoi
- Operating Contract
- Current API Map
- Authentication and Access
- Safe Read Workflow
- Pagination
- Offline Protocol Validation
- Mutation and Upload Workflow
- Errors and Rate Limits
- Official Integrations
- References
python3 -B scripts/validate_auth_config.py --require read python3 -B scripts/protocols_read.py list --query "single cell RNA" python3 -B scripts/protocols_read.py get --id "protocol-uri/v2" python3 -B scripts/protocols_read.py export-pdf \ python3 -B scripts/protocols_read.py --execute \ list --query "single cell RNA" --page-size 10 --max-pages 2 --max-items 20 python3 -B scripts/pagination_helper.py \ python3 -B scripts/validate_protocol_json.py \ python3 -B scripts/plan_write_request.py \
What does the protocolsio-integration skill do?
Read, validate, and safely export protocols.io data with current official REST/MCP contracts, or create non-executing mutation plans. The bundled client makes bounded official-host GET requests only with explicit --execute. Use only for tasks explicitly targeting protocols.io or an exact protocols.io protocol version.
How do I install it?
Run `npx skills add K-Dense-AI/scientific-agent-skills --skill protocolsio-integration --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From K-Dense-AI/scientific-agent-skills, a repository with 32,619 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.