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K-Dense-AI/

scientific-agent-skills

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Scientific Agent Skills provides 158 ready-to-use skills and 100+ databases for AI agents, with multiple hosting options and CI-tested tooling. Latest release is v2.62.0 (2026-07-31).

33kstars
3.2kforks
7issues
MITlicense
2025since
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Reviewgenerated from repository data · Aug 5, 2026

What it is

Turn any AI agent into an AI Scientist by providing 158 ready-to-use scientific and research skills, plus access to 100+ databases. The project targets compatibility with multiple agent hosts and emphasizes documented code examples, testing, and integration guides.

How it works

The repository offers curated skills with documentation, practical code examples, integration guides, and tests. Each skill ships a tests/ suite to validate tooling. It supports multiple hosts and provides a standard agent-skills workflow for installation and usage, including host-specific discovery and provenance metadata handling.

Getting started

Getting started options include:

  • Installing via npx:
npx skills add K-Dense-AI/scientific-agent-skills
  • Installing via GitHub CLI (gh skill):
# Browse and install interactively
gh skill install K-Dense-AI/scientific-agent-skills

# Install a specific skill directly
gh skill install K-Dense-AI/scientific-agent-skills scanpy

Pinning a version:

gh skill install K-Dense-AI/scientific-agent-skills --pin v2.62.0

Updating skills:

gh skill update --all

Recent releases

  • v2.62.0 (2026-07-31): Changes include updating version references to 2.62.0 in pyproject.toml and README.md, and citation-management documentation.
  • v2.61.0 (2026-07-29): Changes include updating version to 2.61.0 and skill versions to 1.4 and 1.5 across multiple skills.
  • v2.60.0 (2026-07-28): Version update to 2.60.0 and incremented skill count to 158; tests added to ensure script-bearing skills are tested.
  • v2.59.0 (2026-07-27): Added zarr image, skill images, and several new skills such as analytical-method-validation and pathogen-variant-surveillance.
  • v2.57.0 (2026-07-26): Added pytest as a dependency and bumped version to 2.57.0; updated pi-agent skill.

Traction

32619 stars, 3222 forks, 7 open issues. Language: Python. License: MIT. Created: 2025-10-19. Last push: 2026-08-03.

Behind the repo

Not provided in the README excerpt.

Caveats

License: MIT. Open issues: 7. Created: 2025-10-19. Last push: 2026-08-03.

Agent skills inside · 158
All skills →
docxUse this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files) or Word templates (.dotx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', '.dotx', or requests to produce professional documents with formatting like tables of contents, headings, page numbers, or letterheads. Also use when extracting or reorganizing content from .docx or .dotx files, inserting or replacing images in documents, performing find-and-replace in Word files, working with tracked changes or comments, or converting content into a polished Word documenDocumentationscriptspptxUse this skill any time a .pptx or .potx file is involved in any way — as input, output, or both. This includes: creating slide decks, pitch decks, or presentations; reading, parsing, or extracting text from any .pptx or .potx file (even if the extracted content will be used elsewhere, like in an email or summary); editing, modifying, or updating existing presentations; combining or splitting slide files; working with templates (.potx), layouts, speaker notes, or comments. Trigger whenever the user mentions \"deck,\" \"slides,\" \"presentation,\" or references a .pptx or .potx filename, regardContent & MarketingscriptsxlsxCreate, edit, analyze, or convert Excel spreadsheets (.xlsx, .xlsm, .xltx) where the workbook file is the primary deliverable. Use for formulas, formatting, financial models, multi-sheet workbooks, and tabular cleanup exported to Excel. Also applies to .csv/.tsv when the user wants spreadsheet output. Do NOT use for Word documents, HTML reports, standalone Python scripts, database pipelines, or Google Sheets API work.Databasesscriptsclinical-reportsCreate safety-bounded draft structures and run local deterministic checks for clinical case, diagnostic, trial, safety, and aggregate research reports. Use only with synthetic, de-identified, or aggregate inputs and verified source-fact manifests; every output requires qualified review.Code Review & Qualityscriptsiso-standards-readinessPrepares and structurally reviews readiness evidence for ISO management-system and laboratory-competence standards - ISO 13485 medical device QMS, ISO 14971 device risk management, ISO/IEC 17025 testing and calibration laboratories, and ISO 15189 medical laboratories. Use when organizing declared scope, controlled documents, risk-management files, scope of accreditation, traceability, CAPA, external-provider controls, or bounded local evidence manifests, and when separating ISO certification from laboratory accreditation, FDA QMSR inspection, CLIA certification, MDSAP, and EU MDR/IVDR evidenceOtherscriptsscientific-writingDraft, revise, and audit scientific manuscripts or reports with explicit evidence provenance, reporting-guideline coverage, authorship accountability, confidentiality controls, and local consistency checks. Use for manuscript sections, references, declarations, tables, figures, or submission preparation when scientific accuracy and traceability matter.Securityscripts
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