nextflow-pipeline-executor
Nextflow workflow management skill for reproducible bioinformatics pipelines
npx skills add a5c-ai/babysitter --skill nextflow-pipeline-executor --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# Nextflow Pipeline Executor Skill ## Purpose Provide Nextflow workflow management for reproducible bioinformatics pipelines. ## Capabilities - DSL2 workflow execution - Container integration (Docker/Singularity) - Cloud execution (AWS, GCP, Azure) - Pipeline parameterization - Resume and caching - Execution reports and timelines ## Usage Guidelines - Use DSL2 for modular pipelines - Containerize processes for reproducibility - Configure for target execution environment - Enable resume for fault tolerance - Generate execution reports - Document pipeline versions ## Dependencies - Nextflow - nf-core - Snakemake ## Process Integration - Reproducible Research Workflow (reproducible-research) - Analysis Pipeline Validation (pipeline-validation) - All analysis pipelines
- Purpose
- Capabilities
- Usage Guidelines
- Dependencies
- Process Integration
What does the nextflow-pipeline-executor skill do?
Nextflow workflow management skill for reproducible bioinformatics pipelines
How do I install it?
Run `npx skills add a5c-ai/babysitter --skill nextflow-pipeline-executor --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From a5c-ai/babysitter, a repository with 1,642 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.