hcpep-skill
Use this skill whenever the user wants an end-to-end workflow for the HCP Early Psychosis (HCP-EP) dataset, including dataset download, BIDS organization, and multimodal processing of sMRI, fMRI, and dMRI. Triggers include: 'HCP Early Psychosis', 'HCP-EP', 'process HCP Early Psychosis data', 'HCP EP sMRI fMRI', or any request to run the HCP-EP multimodal pipeline.
npx skills add BioTender-max/awesome-bio-agent-skills --skill hcpep-skill --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# HCP-EP Skill (Dataset-Orchestration Layer) ## Overview `hcpep-skill` is the NeuroClaw orchestration skill for the **HCP Early Psychosis (HCP-EP)** dataset. It strictly follows the NeuroClaw hierarchical design principles: - This skill **only describes WHAT needs to be done** and **which tool skill to delegate to**. - It contains **no implementation code or concrete commands**. - All concrete execution is delegated to existing base/tool skills via `claw-shell`. - Companion scripts in `scripts/` provide reference implementations for data reorganization, phenotype extraction, and QC. **Core workflow (never bypassed):** 1. Identify input HCP-EP data and target modalities. 2. Generate a **numbered execution plan** clearly stating WHAT needs to be done and which tool skill will handle each step. 3. Present the full plan, estimated runtime, resource requirements, and risks to the user and wait for explicit confirmation ("YES" / "execute" / "proceed"). 4. On confirmation, delegate every step to the appropriate skill via `claw-shell`. 5. After execution, save all outputs in a clean directory structure (`hcpep_output/`). **Research use only.** --- ## Quick Reference | Task | What needs to
- Overview
- Quick Reference
- Download Stage (Mandatory First Step)
- Source
- Dataset Characteristics
- Diagnostic Groups
- Download Inputs to Confirm in Plan
- HCP-EP Task Paradigms
- BIDS Preparation
- Script: scripts/reorganizehcpep.py
- Core Workflow (Never Bypassed)
- Modality Processing Delegation
- Standard Output Layout
- Benchmark Adapter Guidance
python skills/hcpep-skill/scripts/reorganize_hcpep.py \
What does the hcpep-skill skill do?
Use this skill whenever the user wants an end-to-end workflow for the HCP Early Psychosis (HCP-EP) dataset, including dataset download, BIDS organization, and multimodal processing of sMRI, fMRI, and dMRI. Triggers include: 'HCP Early Psychosis', 'HCP-EP', 'process HCP Early Psychosis data', 'HCP EP sMRI fMRI', or any request to run the HCP-EP multimodal pipeline.
How do I install it?
Run `npx skills add BioTender-max/awesome-bio-agent-skills --skill hcpep-skill --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From BioTender-max/awesome-bio-agent-skills, a repository with 135 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.