topexpressinggenesofallcells
Identifies and visualizes the top expressing genes per cluster across ALL cells (before T/B cell selection), followed by pathway enrichment analysis. Provides initial overview of all cell populations by highlighting the most highly expressed genes and their biological functions.
Profile →npx skills add majiayu000/claude-skill-registry --skill topexpressinggenes --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# TopExpressingGenesOfAllCells Process Configuration ## Purpose Identifies and visualizes the top expressing genes per cluster across ALL cells (before T/B cell selection), followed by pathway enrichment analysis. Provides initial overview of all cell populations by highlighting the most highly expressed genes and their biological functions. ## When to Use - **After**: `SeuratClusteringOfAllCells` process - **Before**: `TOrBCellSelection` (this is a pre-selection analysis) - **Use cases**: - Quick overview of ALL cell populations before separation - Initial assessment of broad cell type signatures - Understanding overall cell composition before T/B selection - Pathway enrichment on cell type markers before detailed analysis - Quality check for unexpected cell types - Complementary to `ClusterMarkersOfAllCells` for complete pre-selection profiling - **Optional process**: Enable only when pre-selection analysis is needed ## Configuration Structure ### Process Enablement ```toml [TopExpressingGenesOfAllCells] cache = true ``` ### Input Specification ```toml [TopExpressingGenesOfAllCells.in] srtobj = ["SeuratClusteringOfAllCells"] ``` **Note**: `srtobj` accepts the output from `SeuratC
- Purpose
- When to Use
- Configuration Structure
- Process Enablement
- Input Specification
- Environment Variables
- Core Parameters
- Enrichment Plot Settings
- Cell Subsetting
- Cache Control
- Configuration Examples
- Minimal Configuration
- Top 10 Genes for Broad Cell Type ID
- Multiple Databases for Comprehensive Overview
What does the topexpressinggenesofallcells skill do?
Identifies and visualizes the top expressing genes per cluster across ALL cells (before T/B cell selection), followed by pathway enrichment analysis. Provides initial overview of all cell populations by highlighting the most highly expressed genes and their biological functions.
How do I install it?
Run `npx skills add majiayu000/claude-skill-registry --skill topexpressinggenes --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From majiayu000/claude-skill-registry, a repository with 534 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.