spatial-agent
SpatialAgent focuses on the biological interpretation of spatial transcriptomics data, specifically aiming to propose mechanistic hypotheses about tissue organization and cellular interactions.
npx skills add majiayu000/claude-skill-registry --skill spatial-agent --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
<!-- # COPYRIGHT NOTICE # This file is part of the "Universal Biomedical Skills" project. # Copyright (c) 2026 MD BABU MIA, PhD <md.babu.mia@mssm.edu> # All Rights Reserved. # # This code is proprietary and confidential. # Unauthorized copying of this file, via any medium is strictly prohibited. # # Provenance: Authenticated by MD BABU MIA --> --- name: 'spatial-agent' description: 'An agent that interprets spatial transcriptomics data to propose mechanistic hypotheses and analyze tissue organization.' measurable_outcome: Execute skill workflow successfully with valid output within 15 minutes. allowed-tools: - read_file - run_shell_command --- # SpatialAgent SpatialAgent focuses on the biological interpretation of spatial transcriptomics data, specifically aiming to propose mechanistic hypotheses about tissue organization and cellular interactions. ## When to Use This Skill * **Mechanistic Interpretation**: When you have clusters or spatial domains and need to understand *why* they are organized that way. * **Cell-Cell Interaction**: To predict and interpret ligand-receptor interactions in a spatial context. * **Hypothesis Generation**: To propose biological mechanisms driving the
- When to Use This Skill
- Core Capabilities
- Workflow
- Example Usage
What does the spatial-agent skill do?
SpatialAgent focuses on the biological interpretation of spatial transcriptomics data, specifically aiming to propose mechanistic hypotheses about tissue organization and cellular interactions.
How do I install it?
Run `npx skills add majiayu000/claude-skill-registry --skill spatial-agent --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From majiayu000/claude-skill-registry, a repository with 534 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.