Skill collection

maziyarpanahi/openmed

72 agent skills across 11 categories, read straight from the repository tree.

Maziyar Panahi4,851★ across the radarProfile →
72
Skills published
11
Categories
4,851
Stars on the repo
Tracked on the radar · 4,851★Repository facts and velocity →
Data & Analytics · 16
All in category →
ingesting-clinical-documentsTurn scanned faxes, images, and CSV/CDA exports into clean text ready for OpenMed de-identification and NER…extracting-sdohExtracts social determinants of health (SDOH) — housing instability, food insecurity, unemployment…computing-ecqmsCompute electronic clinical quality measures (eCQMs) over structured data using CQL/QDM logic, lifting…configuring-privacy-policiesSelect and customize OpenMed's seven bundled privacy policy profiles for de-identification, and build custom…deidentify-a-datasetDe-identify selected free-text columns in a local CSV, JSONL, or Parquet dataset with OpenMed and produce a…detecting-pv-signalsComputes disproportionality signals — PRR, ROR, EBGM, and IC (BCPNN) — over FAERS / OpenFDA drug-event data…enforcing-nophi-loggingAdd a logging and telemetry guard that scrubs or blocks PHI from logs, traces, and error reports around an…exporting-bulk-fhirKick off and harvest a FHIR Bulk Data $export (system-, group-, or patient-level) and stream the resulting…extracting-clinical-entitiesRun clinical and biomedical named-entity recognition on medical text with OpenMed's analyze_text. Use when…
extracting-dicom-metadatapseudonymizing-for-gdprreporting-adverse-eventsreviewing-reidentification-riskrunning-zeroshot-nerauditing-deid-leakagebatch-processing-clinical-text
Backend & API · 11
All in category →
deploying-openmed-mcpRun OpenMed's Model Context Protocol (MCP) server so coding agents (Claude Code, Codex) and chat clients can…fetching-fhir-resourcesFetches and pages FHIR R4 resources (Patient, DocumentReference, DiagnosticReport, Observation, Condition)…linking-umls-conceptsLinks entities extracted by OpenMed to UMLS Metathesaurus CUIs using the USER'S OWN UTS API key, with nothing…mapping-to-snomedMaps clinical concept spans extracted by OpenMed to SNOMED CT concepts through a USER-SUPPLIED terminology…normalizing-rxnormNormalizes drug mentions extracted by OpenMed to RxNorm RxCUIs using the free public RxNav/RxNorm REST API.…querying-openfda-labelsLooks up FDA drug labels, NDC directory entries, indications, boxed warnings, and recalls/enforcement actions…querying-terminology-serviceCall a user-supplied FHIR terminology server ($validate-code, $expand, $lookup, $translate) to validate and…searching-clinicaltrialsSearches ClinicalTrials.gov for studies by condition, intervention, and recruitment status using the modern…assembling-fhir-bundlesPackage multiple FHIR R4 resources produced from OpenMed output into a single valid transaction Bundle ready…
annotating-variantsbenchmark-pii-recall
Workflow & Productivity · 7
All in category →
building-with-openmedOrient and bootstrap any project that uses OpenMed, the on-device clinical and biomedical NLP library, for…choosing-openmed-modelsDiscover and pick the right OpenMed model for a clinical or biomedical task, domain, or language. Use when…parsing-ccda-documentsParses C-CDA / CCD XML clinical documents to extract human-readable section narrative plus coded entries…parsing-hl7v2-messagesDecodes pipe-delimited HL7 v2.x messages (ADT, ORU, MDM, ORM) into structured segments/fields/components and…reconciling-problem-listsDeduplicate and reconcile OpenMed-extracted conditions into one clean active problem list with clinical…segmenting-clinical-sectionsSplit a clinical note into canonical sections (Chief Complaint, HPI, PMH, Medications, Allergies, Assessment…summarizing-clinical-notesProduces structured, citation-anchored summaries of clinical notes — one-liner, hospital course, and…
Testing & QA · 6
All in category →
auditing-safe-harbor-checklistVerify OpenMed de-identified output against all 18 HIPAA Safe Harbor identifier categories and report…building-gold-corpusScaffold a synthetic gold-standard annotation project for evaluating OpenMed NER and de-identification models…extracting-lab-tablesDetects and extracts tabular laboratory panels from PDFs, scans, and images into structured rows ready for…gating-deid-leakageAdd a CI gate that fails the build when an OpenMed de-identification model's recall on a held-out PHI set…generating-synthea-dataGenerates synthetic but realistic patient records (FHIR R4 bundles, C-CDA documents, CSV) with MITRE Synthea…mapping-loincMaps laboratory and clinical observation names extracted by OpenMed to LOINC codes using the public…
Security · 4
All in category →
checking-hipaa-complianceRuns a HIPAA Privacy and Security Rule checklist over a data pipeline and produces a gap report before…auditing-subgroup-fairnessAudit an OpenMed NER or de-identification model for performance disparities across demographic subgroups…auditing-part11-trailsGenerates and verifies 21 CFR Part 11-style audit trails — who/what/when, electronic signatures, and…auditing-deidentification-runsProduce a signed, reproducible, no-PHI audit trail for an OpenMed de-identification run via…
AI & Agents · 4
All in category →
evaluating-with-leakage-gatesEvaluate an OpenMed de-identification or clinical NER model against the leakage-first release gates G1a…extract-clinical-entities-to-fhirExtract clinical entities from synthetic or already de-identified text with OpenMed and map them into…loading-openmed-modelsLoad OpenMed clinical/biomedical NER models from the Hugging Face Hub or a local path and reuse them…pick-a-pii-modelSelect an on-device OpenMed PII model from the committed registry by language, runtime format, and size…
Code Review & Quality · 2
All in category →
coding-icd10Suggests candidate ICD-10-CM diagnosis codes (and ICD-10-PCS procedure codes) for diagnoses and procedures…benchmarking-clinical-nerScore an OpenMed clinical or biomedical NER model against a user-supplied gold corpus with entity-level…
Documentation · 2
All in category →
authoring-model-cardsGenerate a model card for an OpenMed clinical NER or de-identification model documenting intended use…coding-hcc-risk-adjustmentMaps chronic conditions extracted by OpenMed to CMS-HCC V28 risk-adjustment categories and estimates a RAF…
DevOps & Cloud · 2
All in category →
running-openmed-ondeviceRun OpenMed models fully on-device with the MLX (Apple Silicon), CoreML (iOS/macOS), or ONNX/WebGPU…serving-openmed-rest-apiStand up OpenMed's FastAPI REST service for clinical NER, PII extraction, and de-identification, with health…
Databases · 1
All in category →
etl-to-omop-cdmMap OpenMed-extracted, terminology-coded conditions, drugs, and measurements into OMOP CDM v5.4 clinical…
Other · 17
building-patient-timelinesAssemble a chronological patient timeline from OpenMed-extracted clinical events, normalizing dates and…defining-cohort-phenotypesAuthors computable phenotype and cohort definitions in the OHDSI ATLAS / CIRCE style over the OMOP CDM…deidentifying-clinical-textRemove, mask, or replace PHI/PII in clinical free text on-device with OpenMed's deidentify(). Use when the…deidentifying-multilingual-textDe-identify non-English clinical text on-device with OpenMed by passing lang= and locale= to deidentify().…exporting-to-fhirConvert OpenMed NER output (entities from openmed.analyze_text) into FHIR R4 resources — Condition…extracting-pii-entitiesDetect PHI/PII spans in clinical text with OpenMed's extract_pii without altering the text. Use when the user…generating-synthetic-surrogatesReplace detected PHI with realistic, type-matched fake values in OpenMed so clinical notes stay readable and…mining-pubmed-literatureSearches and fetches PubMed and PMC via NCBI E-utilities (ESearch then EFetch/ESummary) to gather biomedical…parsing-lab-valuesParse laboratory values and reference ranges from clinical text and flag results as low, normal, high, or…
parsing-trial-eligibilityreidentifying-textresolving-clinical-contextscaffolding-smart-on-fhirshifting-clinical-datesstructuring-radiology-reportsvalidating-us-corebridging-presidio-and-spacy
For maintainers

Maintain maziyarpanahi/openmed? Drop this in your README — it shows how many of your skills are listed and updates itself.

VibeCrowd Skills badge
[![VibeCrowd Skills](https://vibecrowd.fund/api/skill-badge/maziyarpanahi--openmed)](https://vibecrowd.fund/skills/sources/maziyarpanahi--openmed)
About this collection
How many skills does maziyarpanahi/openmed publish?

72 that pass our gate — each has a real description and a SKILL.md we could read.

How do I install one?

Every skill page carries its own command — `npx skills add maziyarpanahi/openmed --skill <name> --agent claude-code`. Swap the agent for codex, cursor or copilot.

Keep going
All skills →
The full catalog, by category and by tool.
Open Source Radar →
The repositories these collections come from.
More from maziyarpanahi →
Everything this maker publishes.