methodology-extractor
Batch extraction of experimental methods from multiple papers for protocol comparison
npx skills add majiayu000/claude-skill-registry --skill methodology-extractor --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# Methodology Extractor Extract and compare experimental protocols across papers. ## Use Cases - Protocol optimization - Methods comparison for systematic reviews - Reproducibility assessment ## Parameters - `paper_ids`: List of papers to analyze - `method_type`: Target method (e.g., "Western Blot", "qPCR") ## Returns - Comparison table of protocols - Parameter variations across studies - Best practice recommendations ## Example Input: 50 papers, method_type="Western Blot" Output: Table showing antibody concentrations, blocking conditions, wash times ## Risk Assessment | Risk Indicator | Assessment | Level | |----------------|------------|-------| | Code Execution | Python/R scripts executed locally | Medium | | Network Access | No external API calls | Low | | File System Access | Read input files, write output files | Medium | | Instruction Tampering | Standard prompt guidelines | Low | | Data Exposure | Output files saved to workspace | Low | ## Security Checklist - [ ] No hardcoded credentials or API keys - [ ] No unauthorized file system access (../) - [ ] Output does not expose sensitive information - [ ] Prompt injection protections in place - [ ] Input file paths validated (
- Use Cases
- Parameters
- Returns
- Example
- Risk Assessment
- Security Checklist
- Prerequisites
- Evaluation Criteria
- Success Metrics
- Test Cases
- Lifecycle Status
What does the methodology-extractor skill do?
Batch extraction of experimental methods from multiple papers for protocol comparison
How do I install it?
Run `npx skills add majiayu000/claude-skill-registry --skill methodology-extractor --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From majiayu000/claude-skill-registry, a repository with 534 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.