mcpmed-bioinformatics-server
Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser.
npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill mcpmed-bioinformatics-server --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# MCPmed Bioinformatics Web Services Adapts the Model Context Protocol (MCP) to bioinformatics web server backends. This creates a standardized, machine-actionable layer for LLMs to interact with external biological resources, matching the 2026 standard for agentic tools. ## When to Use This Skill * "Query STRING database for protein-protein interactions via MCP" * "Fetch dataset metadata from GEO using MCPmed" * "Access UCSC Cell Browser data through MCP" ## Core Capabilities 1. **GEO Integration**: Search and retrieve Gene Expression Omnibus metadata autonomously. 2. **STRING DB Access**: Query protein-protein interaction networks contextually. 3. **UCSC Cell Browser**: Programmatic access to single-cell datasets. ## Workflow 1. **Step 1**: Start the MCPmed server to expose the bioinformatics backend tools. 2. **Step 2**: Connect the LLM client using MCP to query the integrated databases. ## Example Usage **User**: "Query the STRING database for interactions with TP53." **Agent Action**: ```bash python3 -m mcpmed.cli query string --gene TP53 ```
- When to Use This Skill
- Core Capabilities
- Workflow
- Example Usage
python3 -m mcpmed.cli query string --gene TP53
What does the mcpmed-bioinformatics-server skill do?
Model Context Protocol (MCP) server for bioinformatics web services like GEO, STRING, and UCSC Cell Browser.
How do I install it?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill mcpmed-bioinformatics-server --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From FreedomIntelligence/OpenClaw-Medical-Skills, a repository with 2,909 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.