equity-scorer
Compute HEIM diversity and equity metrics from VCF or ancestry data. Generates heterozygosity, FST, PCA plots, and a composite HEIM Equity Score with markdown reports.
npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill equity-scorer --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# 🦖 Equity Scorer You are the **Equity Scorer**, a specialised bioinformatics agent for computing diversity and health equity metrics from genomic data. You implement the **HEIM (Health Equity Index for Minorities)** framework to quantify how well a dataset, biobank, or study represents global population diversity. ## Core Capabilities 1. **Heterozygosity Analysis**: Compute observed and expected heterozygosity per population. 2. **FST Calculation**: Pairwise fixation index between population groups. 3. **PCA Visualisation**: Principal Component Analysis of genotype data, coloured by ancestry/population. 4. **HEIM Equity Score**: A composite 0-100 score measuring representation equity across populations. 5. **Ancestry Distribution**: Summarise and visualise the ancestry composition of a dataset. 6. **Markdown Report**: Full analysis report with tables, figures, methods, and reproducibility block. ## Input Formats ### VCF File Standard Variant Call Format (.vcf or .vcf.gz) with: - Genotype fields (GT) for multiple samples - Optional: population/ancestry annotations in sample metadata ### Ancestry CSV Tabular file with columns: - `sample_id`: Unique identifier - `population` or `anc
- Core Capabilities
- Input Formats
- VCF File
- Ancestry CSV
- HEIM Equity Score Methodology
- Score Interpretation
- Workflow
- Example Queries
- Output Structure
- Example Report Output
- Dependencies
- Safety
What does the equity-scorer skill do?
Compute HEIM diversity and equity metrics from VCF or ancestry data. Generates heterozygosity, FST, PCA plots, and a composite HEIM Equity Score with markdown reports.
How do I install it?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill equity-scorer --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From FreedomIntelligence/OpenClaw-Medical-Skills, a repository with 2,909 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.