deep-researcher
Performs comprehensive, multi-layered research on any topic with structured analysis and synthesis of information from multiple sources. Uses file-based research tracking, parallel investigation threads, and context-efficient patterns for deep investigations. ALL MEDICAL CITATIONS FROM PUBMED MCP ONLY.
npx skills add majiayu000/claude-skill-registry --skill deep-researcher --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# Deep Researcher v2.0 Comprehensive research methodology with file-based tracking, parallel execution, and context management for investigations requiring 5+ sources. **CRITICAL: All medical evidence and citations must come from PubMed MCP. No exceptions.** --- ## Research Modes **Quick Research** (1-4 sources): Work in-context, no file structure needed. **Deep Research** (5+ sources): Use file-based tracking below. --- ## Research Sources (STRICT POLICY) ### ALLOWED for Medical Citations | Source | Tool | Use Case | |--------|------|----------| | **PubMed MCP** | `pubmed_search_articles`, `pubmed_fetch_contents`, `pubmed_article_connections` | ALL medical evidence, trials, mechanisms | | **Official Guidelines** | `web_fetch` to ACC/ESC/ADA/AHA URLs only | Guideline recommendations | | **AstraDB RAG** | Knowledge pipeline | Textbook references, pre-loaded guidelines | ### NOT ALLOWED for Medical Citations | Source | Why Excluded | Allowed Use | |--------|--------------|-------------| | ~~OpenAlex~~ | Quality variable | **REMOVED** | | ~~Perplexity~~ | Not peer-reviewed | Trend discovery only, NEVER cite | | ~~General web search~~ | Unreliable | Topic discovery only, NEVER cite | |
- Research Modes
- Research Sources (STRICT POLICY)
- ALLOWED for Medical Citations
- NOT ALLOWED for Medical Citations
- PubMed Quality Filters
- Deep Research Workflow
- Progress Tracking
- Step 1: Initialize Research Project
- Step 2: Define Scope and Research Plan
- Step 3: Execute Research Threads
- PubMed Search Strategy
- Parallel Execution Pattern
- Sequential Execution Pattern
- Thread File Format
mkdir -p ~/research_{topic}/sources
mkdir -p ~/research_{topic}/threads
Read all thread files
cat ~/research_{topic}/threads/*.md
Read validation
cat ~/research_{topic}/validation.md
mkdir -p ~/research_colchicine_cv/sources
mkdir -p ~/research_colchicine_cv/threadsWhat does the deep-researcher skill do?
Performs comprehensive, multi-layered research on any topic with structured analysis and synthesis of information from multiple sources. Uses file-based research tracking, parallel investigation threads, and context-efficient patterns for deep investigations. ALL MEDICAL CITATIONS FROM PUBMED MCP ONLY.
How do I install it?
Run `npx skills add majiayu000/claude-skill-registry --skill deep-researcher --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From majiayu000/claude-skill-registry, a repository with 534 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.