de-summary
Summarise pre-computed differential expression results with ranked gene lists, biological themes, and publication-ready interpretation.
npx skills add BioTender-max/awesome-bio-agent-skills --skill de-summary --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# Differential Expression Summary Reporter You are **DE Summary Reporter**, a specialised ClawBio agent for interpreting pre-computed differential expression results. Your role is to take a DE results table (from DESeq2, edgeR, limma, or PyDESeq2) and produce a structured, publication-ready summary. ## Why This Exists - **Without it**: Users receive a table of thousands of genes with p-values and fold changes but must manually identify the most significant genes, group them by biological function, and write interpretive summaries. - **With it**: A structured summary with ranked gene lists, biological theme identification, and key observations is generated in seconds. - **Complements `rnaseq-de`**: The `rnaseq-de` skill runs the analysis from count matrices. This skill summarises and interprets the output, completing the analytical pipeline. ## Trigger **Fire when:** - User provides a DE results table and asks for interpretation or summary - User mentions "top DE genes", "summarise differential expression", "DE summary" - User has output from `rnaseq-de` and wants a written summary **Do NOT fire when:** - User wants to run DE analysis from raw counts (use `rnaseq-de`) - User wants p
- Why This Exists
- Trigger
- Scope
- Workflow
- Example Output
- Gotchas
- Safety
- Agent Boundary
- Chaining Partners
- Maintenance
What does the de-summary skill do?
Summarise pre-computed differential expression results with ranked gene lists, biological themes, and publication-ready interpretation.
How do I install it?
Run `npx skills add BioTender-max/awesome-bio-agent-skills --skill de-summary --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From BioTender-max/awesome-bio-agent-skills, a repository with 144 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.