clustermarkersofallcells
Finds marker genes for clusters of ALL cells before T/B cell selection. This process identifies differentially expressed genes across unsupervised clusters to help identify broad cell types (T cells, B cells, Myeloid cells, NK cells, etc.) in mixed immune cell populations.
npx skills add majiayu000/claude-skill-registry --skill clustermarkers-pwwang-immunopipe-041d2eb4 --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# ClusterMarkersOfAllCells Process Configuration ## Purpose Finds marker genes for clusters of ALL cells before T/B cell selection. This process identifies differentially expressed genes across unsupervised clusters to help identify broad cell types (T cells, B cells, Myeloid cells, NK cells, etc.) in mixed immune cell populations. ## When to Use - **After `SeuratClusteringOfAllCells`**: Runs on all cells before T/B selection - **Before `TOrBCellSelection`**: Provides markers to identify which clusters are T/B cells - **Broad cell type identification**: Distinguish major immune cell types from mixed populations - **Mixed cell populations**: When your data contains T, B, Myeloid, NK, and other cell types - **Initial cell typing**: First-pass identification before detailed annotation - **Data quality check**: Verify expected cell types are present in your data ## Configuration Structure ### Process Enablement ```toml [ClusterMarkersOfAllCells] cache = true ``` ### Input Specification ```toml [ClusterMarkersOfAllCells.in] srtobj = ["SeuratClusteringOfAllCells"] # Accepts output from SeuratClusteringOfAllCells process ``` ### Environment Variables All parameters are inherited from `Clu
- Purpose
- When to Use
- Configuration Structure
- Process Enablement
- Input Specification
- Environment Variables
- External References
- Seurat FindMarkers Parameters
- Enrichment Databases
- Configuration Examples
- Minimal Configuration
- Standard Marker Finding
- Common Patterns
- Pattern 1: Broad Cell Type Markers
What does the clustermarkersofallcells skill do?
Finds marker genes for clusters of ALL cells before T/B cell selection. This process identifies differentially expressed genes across unsupervised clusters to help identify broad cell types (T cells, B cells, Myeloid cells, NK cells, etc.) in mixed immune cell populations.
How do I install it?
Run `npx skills add majiayu000/claude-skill-registry --skill clustermarkers-pwwang-immunopipe-041d2eb4 --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From majiayu000/claude-skill-registry, a repository with 534 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.