cellranger-processor
Cell Ranger skill for 10X Genomics single-cell data processing
npx skills add a5c-ai/babysitter --skill cellranger-processor --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
# CellRanger Processor Skill ## Purpose Provide Cell Ranger capabilities for 10X Genomics single-cell data processing including demultiplexing and alignment. ## Capabilities - BCL to FASTQ conversion - Cell barcode demultiplexing - UMI counting - Feature barcode processing - Aggregate sample analysis - Loupe Browser file generation ## Usage Guidelines - Configure sample sheets accurately - Validate cell counts against expectations - Review QC metrics from web summary - Aggregate samples for combined analysis - Generate Loupe files for visualization - Document reference versions ## Dependencies - Cell Ranger - STARsolo ## Process Integration - Single-Cell RNA-seq Analysis (scrnaseq-analysis) - Spatial Transcriptomics Analysis (spatial-transcriptomics)
- Purpose
- Capabilities
- Usage Guidelines
- Dependencies
- Process Integration
What does the cellranger-processor skill do?
Cell Ranger skill for 10X Genomics single-cell data processing
How do I install it?
Run `npx skills add a5c-ai/babysitter --skill cellranger-processor --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From a5c-ai/babysitter, a repository with 1,642 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.