bio-tcr-bcr-analysis-repertoire-visualization
Create publication-quality visualizations of immune repertoire data including circos plots, clone tracking, diversity plots, and network graphs. Use when generating figures for repertoire comparisons, clonal dynamics, or V(D)J gene usage.
npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-tcr-bcr-analysis-repertoire-visualization --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
## Version Compatibility Reference examples tested with: MiXCR 4.6+, VDJtools 1.2.1+, ggplot2 3.5+, matplotlib 3.8+, pandas 2.2+, scanpy 1.10+, seaborn 0.13+ Before using code patterns, verify installed versions match. If versions differ: - Python: `pip show <package>` then `help(module.function)` to check signatures - R: `packageVersion('<pkg>')` then `?function_name` to verify parameters - CLI: `<tool> --version` then `<tool> --help` to confirm flags If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying. # Repertoire Visualization **"Visualize my immune repertoire data"** → Create publication-quality figures for TCR/BCR repertoires including circos plots, V(D)J gene usage heatmaps, diversity plots, and clonal tracking across samples. - CLI: `vdjtools PlotFancyVJUsage` for circos-style V-J plots - Python: `matplotlib`/`seaborn` for custom repertoire visualizations ## Circos Plots (V-J Gene Usage) ### VDJtools ```bash # Generate V-J usage circos plot vdjtools PlotFancyVJUsage \ -m metadata.txt \ output_dir/ # Generates PDF circos plots showing V-J pairing frequencies ``` ### Pyth
- Version Compatibility
- Circos Plots (V-J Gene Usage)
- VDJtools
- Python with pyCircos
- R with circlize
- Clone Tracking Over Time
- Diversity Plots
- Overlap Heatmap
- Spectratype Plot
- Clonotype Network
- Related Skills
Generate V-J usage circos plot vdjtools PlotFancyVJUsage \ output_dir/ Generates PDF circos plots showing V-J pairing frequencies
What does the bio-tcr-bcr-analysis-repertoire-visualization skill do?
Create publication-quality visualizations of immune repertoire data including circos plots, clone tracking, diversity plots, and network graphs. Use when generating figures for repertoire comparisons, clonal dynamics, or V(D)J gene usage.
How do I install it?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-tcr-bcr-analysis-repertoire-visualization --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From FreedomIntelligence/OpenClaw-Medical-Skills, a repository with 2,909 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.