bio-structural-biology-alphafold-predictions
Access and analyze AlphaFold protein structure predictions. Use when predicted structures are needed for proteins without experimental structures, or for confidence scores (pLDDT).
npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-structural-biology-alphafold-predictions --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
## Version Compatibility Reference examples tested with: BioPython 1.83+, matplotlib 3.8+, numpy 1.26+, scanpy 1.10+ Before using code patterns, verify installed versions match. If versions differ: - Python: `pip show <package>` then `help(module.function)` to check signatures If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying. # AlphaFold Predictions **"Get the AlphaFold predicted structure for my protein"** → Download pre-computed AlphaFold structures by UniProt ID and assess prediction quality via per-residue pLDDT confidence scores. - Python: `requests.get(f'https://alphafold.ebi.ac.uk/files/AF-{uniprot}-F1-model_v4.pdb')` Download and analyze AlphaFold predicted protein structures from the AlphaFold Protein Structure Database. ## Download Structures **Goal:** Retrieve pre-computed AlphaFold protein structure predictions and assess prediction quality via pLDDT confidence scores. **Approach:** Query the AlphaFold Protein Structure Database API by UniProt accession to download PDB/CIF files, then extract per-residue pLDDT scores from B-factor columns to identify high-confide
- Version Compatibility
- Download Structures
- Single Structure by UniProt ID
- Check Availability
- Get Metadata
- File Types Available
- Analyze pLDDT Confidence Scores
- Extract from PDB B-factors
- Confidence Interpretation
- Plot pLDDT per Residue
- Analyze PAE (Predicted Aligned Error)
- PAE Interpretation
- Batch Download
- Compare with Experimental Structure
What does the bio-structural-biology-alphafold-predictions skill do?
Access and analyze AlphaFold protein structure predictions. Use when predicted structures are needed for proteins without experimental structures, or for confidence scores (pLDDT).
How do I install it?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-structural-biology-alphafold-predictions --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From FreedomIntelligence/OpenClaw-Medical-Skills, a repository with 2,909 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.