bio-proteomics-data-import
Load and parse mass spectrometry data formats including mzML, mzXML, and quantification tool outputs like MaxQuant proteinGroups.txt. Use when starting a proteomics analysis with raw or processed MS data. Handles contaminant filtering and missing value assessment.
npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-proteomics-data-import --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
## Version Compatibility Reference examples tested with: MSnbase 2.28+, pandas 2.2+ Before using code patterns, verify installed versions match. If versions differ: - Python: `pip show <package>` then `help(module.function)` to check signatures - R: `packageVersion('<pkg>')` then `?function_name` to verify parameters If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying. # Mass Spectrometry Data Import **"Load my mass spec data into Python"** → Parse mzML/mzXML raw files or MaxQuant proteinGroups.txt into data structures for programmatic access and downstream analysis. - Python: `pyopenms.MzMLFile().load()` for raw spectra, `pandas.read_csv()` for search engine outputs - R: `MSnbase::readMSData()` for raw, `read.delim()` for MaxQuant/Proteome Discoverer ## Loading mzML/mzXML Files with pyOpenMS **Goal:** Parse raw mass spectrometry data files into memory for programmatic access. **Approach:** Load mzML/mzXML into an MSExperiment object, then iterate spectra by MS level to access peaks and precursor info. ```python from pyopenms import MSExperiment, MzMLFile, MzXMLFile exp = MSExp
- Version Compatibility
- Loading mzML/mzXML Files with pyOpenMS
- Loading MaxQuant Output
- Loading Spectronaut/DIA-NN Output
- R: Loading with MSnbase
- Missing Value Assessment
- Related Skills
What does the bio-proteomics-data-import skill do?
Load and parse mass spectrometry data formats including mzML, mzXML, and quantification tool outputs like MaxQuant proteinGroups.txt. Use when starting a proteomics analysis with raw or processed MS data. Handles contaminant filtering and missing value assessment.
How do I install it?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-proteomics-data-import --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From FreedomIntelligence/OpenClaw-Medical-Skills, a repository with 2,909 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.