Agent skill · Code Review & Quality

bio-metabolomics-targeted-analysis

Targeted metabolomics analysis using MRM/SRM with standard curves. Covers absolute quantification, method validation, and quality assessment. Use when quantifying specific metabolites using calibration curves and internal standards.

FreedomIntelligencegithub.com/FreedomIntelligenceGitHub ↗
claude-code
Install
npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-targeted-analysis --agent claude-code

Same command for any agent — swap --agent for codex, cursor, copilot.

Facts
Files in the skill folder: 3
SKILL.md size: 10 KB
Bundled scripts: none
Path: skills/bio-metabolomics-targeted-analysis/SKILL.md
Open the folder on GitHub →
Where it comes from
Stars: 2,909
Language: Python
Read our review of the source →

Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.

From the SKILL.md

## Version Compatibility Reference examples tested with: ggplot2 3.5+, matplotlib 3.8+, numpy 1.26+, pandas 2.2+, scikit-learn 1.4+, scipy 1.12+, xcms 4.0+ Before using code patterns, verify installed versions match. If versions differ: - Python: `pip show <package>` then `help(module.function)` to check signatures - R: `packageVersion('<pkg>')` then `?function_name` to verify parameters If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying. # Targeted Metabolomics Analysis **"Quantify specific metabolites from my MRM data"** → Perform absolute quantification using calibration curves, internal standards, and quality assessment for targeted metabolomics. - CLI: Skyline for peak integration and export - Python/R: calibration curve fitting and sample quantification ## Skyline Data Export Processing ```r library(tidyverse) # Load Skyline export skyline_data <- read.csv('skyline_export.csv') # Expected columns: Replicate, Peptide/Molecule, Area, Concentration (for standards) colnames(skyline_data) # Filter to quantifier transitions quant_data <- skyline_data %>% filter(Quantitative ==

What's inside
Steps it walks through
  1. Version Compatibility
  2. Skyline Data Export Processing
  3. Standard Curve Fitting
  4. Calculate Concentrations
  5. Internal Standard Normalization
  6. Method Validation Metrics
  7. Limit of Detection/Quantification
  8. Multi-Compound Analysis
  9. Python Workflow
  10. Quality Control
  11. Export Results
  12. Related Skills
Ships with 2 files
  • examples/targeted_quantification.R
  • usage-guide.md
More from OpenClaw-Medical-Skills
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About this skill
What does the bio-metabolomics-targeted-analysis skill do?

Targeted metabolomics analysis using MRM/SRM with standard curves. Covers absolute quantification, method validation, and quality assessment. Use when quantifying specific metabolites using calibration curves and internal standards.

How do I install it?

Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-targeted-analysis --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.

Where does this skill come from?

From FreedomIntelligence/OpenClaw-Medical-Skills, a repository with 2,909 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.

Is a popular skill a good skill?

Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.

Keep going