bio-metabolomics-lipidomics
Specialized lipidomics analysis for lipid identification, quantification, and pathway interpretation. Covers LC-MS lipidomics with LipidSearch, MS-DIAL, and LipidMaps annotation. Use when analyzing lipid classes, chain composition, or lipid-specific pathways.
npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-lipidomics --agent claude-code
Same command for any agent — swap --agent for codex, cursor, copilot.
Weekly change comes from our own snapshots, not the repository page — it measures attention, not adoption.
## Version Compatibility Reference examples tested with: ggplot2 3.5+, numpy 1.26+, pandas 2.2+, scanpy 1.10+, xcms 4.0+ Before using code patterns, verify installed versions match. If versions differ: - Python: `pip show <package>` then `help(module.function)` to check signatures - R: `packageVersion('<pkg>')` then `?function_name` to verify parameters If code throws ImportError, AttributeError, or TypeError, introspect the installed package and adapt the example to match the actual API rather than retrying. # Lipidomics Analysis **"Analyze my lipidomics data"** → Identify and quantify lipid species by class and chain composition, then perform differential lipid analysis and pathway interpretation. - R: `lipidr::as_lipidomics_experiment()`, `de_analysis()` - CLI: MS-DIAL or LipidSearch for lipid identification ## R Workflow with lipidr ```r library(lipidr) library(ggplot2) # Load lipidomics data (LipidSearch or Skyline format) lipid_data <- read_lipidomes('lipidsearch_export.csv', data_type = 'LipidSearch') # Or from generic matrix lipid_data <- as_lipidomics_experiment( data = intensity_matrix, sample_info = sample_metadata, lipid_info = lipid_annotations ) # Data summary print(l
- Version Compatibility
- R Workflow with lipidr
- Lipid Annotation
- Normalization
- Differential Analysis
- Enrichment Analysis
- Python Workflow with LipidFinder
- MS-DIAL Lipidomics
- Lipid Class Visualization
- Pathway Mapping
- Saturation Analysis
- Export Results
- Related Skills
What does the bio-metabolomics-lipidomics skill do?
Specialized lipidomics analysis for lipid identification, quantification, and pathway interpretation. Covers LC-MS lipidomics with LipidSearch, MS-DIAL, and LipidMaps annotation. Use when analyzing lipid classes, chain composition, or lipid-specific pathways.
How do I install it?
Run `npx skills add FreedomIntelligence/OpenClaw-Medical-Skills --skill bio-metabolomics-lipidomics --agent claude-code` — it drops the skill into your project so the agent can pick it up. Swap the --agent value for codex, cursor or copilot if you use one of those.
Where does this skill come from?
From FreedomIntelligence/OpenClaw-Medical-Skills, a repository with 2,909 stars. We read it straight from the repository tree rather than a submitted listing, so what you see here is what is actually published.
Is a popular skill a good skill?
Not necessarily. Stars measure attention, not adoption — a repository can trend for a week and be abandoned. That is why we show the weekly change from our own snapshots next to the total, instead of a single flattering number.